Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g0539 ATGAGGCGAGTGATGGCTATAGGAGCCGTTGCAAATTCCACCCTTCTCGTATCTTCTAAACCCAATCGCTTCTCCTTCTCCCTCACCAAAACGTCGCCGTTTCTCATTTCTCTTCTCTCTCCTCGCCTTCGCCGCTTCCTTTCTGTTTCTTCTCTAACCGCCGACCACCACAACCTCTCTGATTTCGGAAATGGTGATGGCGTTGGAATTTCTAGCCAAGGTTCGAAGGCGCTGCTCAAAGGGATGACTTACCCTGATCTTGAAAAATGGGTTTACTCACATGGATACAGGCCTGGGCAGGCTATGATGTTATGGAAGCGAATGTATGGAAACAACATTTGGGCCCAACATGTTGATGAGCTGGAAGGATTGAATAAAGATTTCAAGAAAATGTTGAGTGAAAATGCGGAGTTCAAGGCACTTGCTCTGAAAGAAATCCACACAGCATCTGATGGAACAAGAAAGATTTTATTCACATTGGATGATGGGCTGGTCATAGAAACAGTTGTCATTCCTTGTGACAGAGGTAGAACTACTGTATGCGTTTCAAGTCAAGTTGGATGTGCCATGAATTGTCAATTTTGCTATACTGGAAGAATGGGTCTTAGGAGACATCTTACTGCTGCAGAAATAGCAGAGCAGGCCGTTTTTGCCAGACGCTTGCTCACAGATGAAGTTGGCTCCATCACAAATGTTGTCTTTATGGGCATGGGGGAACCACTTCATAACATCGATAATGTCATTACAGCTGCAAATATAATGGTGGATGAACAAGGGCTTCAGTTCAGCCCTCGCAAGGTCACTGTTTCAACTAGTGGGCTTGTTCCACAGCTCAAACGTTTCCTCCATGAATCCAACTGTTCATTAGCTGTTAGTTTGAATGCAACTACTGATGAGTTAAGAAACTGGATCATGCCTATAAATCGAAAGTATAAGCTGGACTTGCTTCTTCAGACACTTCGGGAGGAGCTTCGCTTCAAAAACAACTACAAAGTCCTATTTGAGTATGTGATGCTTGAAGGAATTAACGACAGTGATGGAGATGCAGATAGGCTTATCGAGCTTGTGAAGGGCATTCCTTGCAAGATTAATCTAATCTCATTCAATCCTCACAGTGGATCATTCTTCAGACCAACCAAAGAGGAAAGGATGATTGAATTCCGTAATACATTGGCTAGAGCAGGATTGACAGTCTTGTTAAGACCTAGTAGAGGTGATGATCAAATGGCTGCCTGCGGTCAATTGGGTAAGCCTGGCACCATTCAAGCTCCATTGCTTCGTGTACCAGACCAATTTCAAATGGCAATTGGAACCTCAGCTTGA 1323 0.4407 MRRVMAIGAVANSTLLVSSKPNRFSFSLTKTSPFLISLLSPRLRRFLSVSSLTADHHNLSDFGNGDGVGISSQGSKALLKGMTYPDLEKWVYSHGYRPGQAMMLWKRMYGNNIWAQHVDELEGLNKDFKKMLSENAEFKALALKEIHTASDGTRKILFTLDDGLVIETVVIPCDRGRTTVCVSSQVGCAMNCQFCYTGRMGLRRHLTAAEIAEQAVFARRLLTDEVGSITNVVFMGMGEPLHNIDNVITAANIMVDEQGLQFSPRKVTVSTSGLVPQLKRFLHESNCSLAVSLNATTDELRNWIMPINRKYKLDLLLQTLREELRFKNNYKVLFEYVMLEGINDSDGDADRLIELVKGIPCKINLISFNPHSGSFFRPTKEERMIEFRNTLARAGLTVLLRPSRGDDQMAACGQLGKPGTIQAPLLRVPDQFQMAIGTSA* 441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g0539 440 PANTHER 23S RRNA METHYLTRANSFERASE 65 423 IPR040072 -
Pvu3g0539 440 CDD Radical_SAM 187 387 - -
Pvu3g0539 440 Gene3D - 76 139 - -
Pvu3g0539 440 Gene3D Aldolase class I 141 421 IPR013785 -
Pvu3g0539 440 Pfam 4Fe-4S single cluster domain 187 289 - -
Pvu3g0539 440 ProSiteProfiles Radical SAM core domain profile. 174 407 IPR007197 GO:0003824|GO:0051536
Pvu3g0539 440 Pfam Radical SAM superfamily 183 346 IPR007197 GO:0003824|GO:0051536
Pvu3g0539 440 SFLD Radical SAM 75 417 IPR007197 GO:0003824|GO:0051536
Pvu3g0539 440 SFLD adenosine C2 methyltransferase (RlmN-like) 75 417 IPR004383 GO:0006364|GO:0008173
Pvu3g0539 440 TIGRFAM rRNA_mod_RlmN: 23S rRNA (adenine(2503)-C(2))-methyltransferase 76 416 IPR027492 GO:0030488|GO:0070475
Pvu3g0539 440 SUPERFAMILY Radical SAM enzymes 176 396 - -
Pvu3g0539 440 PANTHER RADICAL SAM SUPERFAMILY PROTEIN 65 423 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g0539 Pvu-Chr3 6474748 6481244 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu3g0539 K06941 - gmx:100813692 755.362
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu3g0539 3 6474748 6481244 Pvu3g0539 3 6474748 6481244 ECH