Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu2g3390 ATGGCCTCAAAGCCCATCACTCTCACCGCACTCTTCTTCCTACTCTCCACCCTCTCACCGCTCAAGGCTTCAGCAGCCTCCTCATTCGTATTCTACAACAAGTGTCCGCACCCAGTGTGGCCCGGGATCCAGCCCAGCGCCGGAAAGCCCATTCTCGCCCGCGGAGGCTTCAAGCTCGCCCCCAACCGGGCCTACTCCCTCCAACTCCCCGCCCTCTGGTCCGGCCGCTTCTGGGGCCGCCACGGCTGCGCCTTCGACGCCTCCGGACGCGGCCGCTGCGCCACCGGCGACTGCGGCGGGTCCCTCTACTGCAACGGCATCGGCGGCACCCCGCCGGCCACCCTGGCGGAGTTCACCCTGGGCAACGAGCAGGACTTCTACGACGTGAGCCTGGTGGACGGGTACAACCTGCCCATCTCCATCACCCCCTTCAAGGGATCCGGAAAATGCAGCTACGCGGGCTGCGTGAGCGACCTGAACACCATGTGCCCGGTGGGCCTTCAGGTGCGTTCACGCGACAACAAGCGCGTGGTGGCCTGCAAGAGCGCTTGCTCCGCCTTCAACTCCCCGAAGTACTGCTGCACGGGCTCGTACGGAAGCCCGCAGGCCTGCAAGCCCACGGTGTATTCGAAGATCTTCAAGAGCGCATGCCCGAAGGCCTACTCCTACGCCTACGATGACCCCACTAGCATCGCCACTTGCACCAAAGCTAACTATTTAATCACTTTCTGCCCTCATCGCCACTGA 747 0.6372 MASKPITLTALFFLLSTLSPLKASAASSFVFYNKCPHPVWPGIQPSAGKPILARGGFKLAPNRAYSLQLPALWSGRFWGRHGCAFDASGRGRCATGDCGGSLYCNGIGGTPPATLAEFTLGNEQDFYDVSLVDGYNLPISITPFKGSGKCSYAGCVSDLNTMCPVGLQVRSRDNKRVVACKSACSAFNSPKYCCTGSYGSPQACKPTVYSKIFKSACPKAYSYAYDDPTSIATCTKANYLITFCPHRH* 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu2g3390 248 ProSiteProfiles Thaumatin family profile. 26 247 IPR001938 -
Pvu2g3390 248 PIRSF PR5 1 248 IPR001938 -
Pvu2g3390 248 SMART tha2 29 245 IPR001938 -
Pvu2g3390 248 SUPERFAMILY Osmotin, thaumatin-like protein 29 246 IPR037176 -
Pvu2g3390 248 CDD TLP-PA 28 244 - -
Pvu2g3390 248 PRINTS Pathogenesis-related protein signature 28 40 IPR001938 -
Pvu2g3390 248 PRINTS Pathogenesis-related protein signature 76 87 IPR001938 -
Pvu2g3390 248 PRINTS Pathogenesis-related protein signature 89 118 IPR001938 -
Pvu2g3390 248 PRINTS Pathogenesis-related protein signature 125 141 IPR001938 -
Pvu2g3390 248 PRINTS Pathogenesis-related protein signature 235 244 IPR001938 -
Pvu2g3390 248 PANTHER OS03G0233200 PROTEIN 10 247 IPR001938 -
Pvu2g3390 248 ProSitePatterns Thaumatin family signature. 89 104 IPR017949 -
Pvu2g3390 248 PANTHER THAUMATIN-LIKE PROTEIN 10 247 - -
Pvu2g3390 248 Gene3D Thaumatin 27 245 IPR037176 -
Pvu2g3390 248 Pfam Thaumatin family 33 245 IPR001938 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu2g3390 Pvu-Chr2 48789867 48791175 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu2g3390 10 246 Receptor kinase-like Gene Family AT5G38280 45.082 1.79e-64 210
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu2g3390 - - gmx:100784636 477.248
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu2g3390 2 48789867 48791175 Pvu2g3390 2 48789867 48791175 ECH