Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu2g3388 ATGGCTGATACATTTGATGAAGAGTGTGACTATCTCTTCAAGGCTGTTCTGATTGGAGACTCTGGAGTTGGAAAATCAAATCTTCTCTCAAGGTTTGCAAAAGATGAATTTCGGTTGGATTCTAAACCCACCATAGGAGTGGAATTTGCTTACAGGAACATCAAGGTTGGAGATAAACTCATCAAAGCTCAAATATGGGACACTGCAGGCCAAGAGAGGTTTAGAGCAATCACAAGTTCATACTACAGAGGAGCCTCAGGGGCAGTGCTAGTGTATGACATAACCATGAGATCAAGTTATGAGAATGTGAGGAAGTGGTTGTTGGAGCTGAGAGAGTTTGGAGGAGAAGACATGGTGATTGTTCTGGTGGGAAACAAATGCGATCTGGATCAATCAAGAGAGGTTGAGAAAGAAGAGGGAAAAGGGTATGCTGAAACAGAAGGGTTATGCTTCATGGAAACCTCTGCTTTGAAGAATCTCAACGTTGAGCAAGTGTTCTTGCAAATGATCACAAGGATTTATGAGATGACAAGGCAGAAAAATTTGGCAGCAAAAATGGAGGACAAGCCGATTAATCTTCTGAATGGGAAGGAGATTCATGTTACTGATGAAGTCACTGCAACCAAACAAGCTAGTAGCTGCTGTTCAAGATGA 654 0.4205 MADTFDEECDYLFKAVLIGDSGVGKSNLLSRFAKDEFRLDSKPTIGVEFAYRNIKVGDKLIKAQIWDTAGQERFRAITSSYYRGASGAVLVYDITMRSSYENVRKWLLELREFGGEDMVIVLVGNKCDLDQSREVEKEEGKGYAETEGLCFMETSALKNLNVEQVFLQMITRIYEMTRQKNLAAKMEDKPINLLNGKEIHVTDEVTATKQASSCCSR* 218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu2g3388 217 PANTHER SMALL GTPASE SUPERFAMILY, P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASE-RELATED 1 216 - -
Pvu2g3388 217 PANTHER DRAB5-RELATED 1 216 - -
Pvu2g3388 217 SMART ras_sub_4 10 176 - -
Pvu2g3388 217 PRINTS Transforming protein P21 ras signature 13 34 - -
Pvu2g3388 217 PRINTS Transforming protein P21 ras signature 36 52 - -
Pvu2g3388 217 PRINTS Transforming protein P21 ras signature 54 76 - -
Pvu2g3388 217 PRINTS Transforming protein P21 ras signature 116 129 - -
Pvu2g3388 217 PRINTS Transforming protein P21 ras signature 151 173 - -
Pvu2g3388 217 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 8 187 IPR027417 -
Pvu2g3388 217 ProSiteProfiles small GTPase Rab1 family profile. 8 215 - -
Pvu2g3388 217 Pfam Ras family 14 174 IPR001806 GO:0003924|GO:0005525
Pvu2g3388 217 ProSiteProfiles small GTPase Ras family profile. 7 194 IPR001806 GO:0003924|GO:0005525
Pvu2g3388 217 SMART ran_sub_2 18 208 - -
Pvu2g3388 217 ProSiteProfiles small GTPase Rho family profile. 6 174 - -
Pvu2g3388 217 CDD Rab11_like 10 174 - -
Pvu2g3388 217 SMART rho_sub_3 15 176 IPR001806 GO:0003924|GO:0005525
Pvu2g3388 217 SMART rab_sub_5 13 176 - -
Pvu2g3388 217 TIGRFAM small_GTP: small GTP-binding protein domain 12 166 IPR005225 GO:0005525
Pvu2g3388 217 Gene3D - 5 215 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu2g3388 Pvu-Chr2 48776072 48779672 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu2g3388 14 166 EF-hand Containing Proteins AT5G27540 29.091 4.20e-08 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu2g3388 K07976 - gmx:100781746 405.986
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu2g3388 2 48776072 48779672 Pvu2g3388 2 48776072 48779672 ECH