Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu2g3379 ATGGACCCACCCTCCGACCCTCCTCCTCCTCCTCCGGCCACCGTCCCCTTCACCGTCCAACCCAACAACCACCTCCCACCGCCCGACCCCATCTCCACTCCCAACCACCCGCCGTACGACGAGATGATATACACAGCTATTGGGGCTCTGAAGGAGAAAGATGGGTCGAGCAAACGCGCCATAGGAAAGTACATAGAGCAAGTCTACAAGAACCTTCCAACCACTCACTCTGCTCTTCTCACGCACCACCTCAACCGTTTGAGATCAGTTAACCTTCTCGTCATGGTCAGAAAGTCCTACAAGCTCCCTGGATCTGATAATCTTCCAGCATCTCCTCCCTCTCAAGTTCACAAGACCCGTGGCAGGCCTCCCAAACCAAAGCCCCAGCCCATCGTCGACCCTGTCTGGGCTTCACTCGGCCTGTCGGATGACCCTGCTCCTGCTCCTGAATCCGAAAAGAGAGGCCCGGGTCGTCCCAGAAAGATCCTCGGTGTGAGCCCGGGCTCGGCAGTGCCGGCCCGGAGGGGCCGCCCACCGGGCTCCGTTTCGAGATCTAAGTTGTCCAAGAGGTTAGGGCGTCCGCCCAAGCCCAAATCCGTCTCGGGCATCTCCAGTGGGCTCAAACGGCGGGGCCGCCCACCTAAAGCCAAATCCAACCTCTCCGTAATCCCCTTTGCGGTTCCGGTTGCTCCTGACCAGCCCACGGTGCAGCCCATCGTTCCAGACGCTTCTGTGCCCAATGGGTCTCCCAGGCCCAGAGGACGCCCCAAAAAGATTGTTCCTCCTGGTGGTGCTCCACCAATCACTCCCACTGCCGACGGTGGTGCAGCCCGTGGCCGCGGACGGCCACGTGGGGTCTTGCCCATTATTAGGGCGGGTCGGCTCCAGAAACTCGCCGTTGGAAGGGCTAAGAATCCTGCAAGAAGGCCTGTGGGACGCCCTAAGGGATCCACTGCTGCTGCAATCAGTGCACACAAGGTTGCTAATGAAGATCTAAGGAAGAAGCTTGAACACTTTCAAGCCAAAGTGAAGGAGTCTCTTGGCATGCTCAAGCCGTACTTTAACCATGAAAGCCCAGTCACTGCAATTGCAGCAATTCAAGAGCTGGAAGTGCTGTCAACTTTGGATCTTAAGGCAGCATTGAGGGAAGAGACTCATCAACAGCCAGAGCCACTGCCGCAGACACAGGTGGTGTATGAACAGCAATATGCCCCCCAGGTGCCGCAACAGCCACAGCTGCAGCAATTTTTTCAACCTCATACATCAGCTCAAAACTAG 1278 0.5728 MDPPSDPPPPPPATVPFTVQPNNHLPPPDPISTPNHPPYDEMIYTAIGALKEKDGSSKRAIGKYIEQVYKNLPTTHSALLTHHLNRLRSVNLLVMVRKSYKLPGSDNLPASPPSQVHKTRGRPPKPKPQPIVDPVWASLGLSDDPAPAPESEKRGPGRPRKILGVSPGSAVPARRGRPPGSVSRSKLSKRLGRPPKPKSVSGISSGLKRRGRPPKAKSNLSVIPFAVPVAPDQPTVQPIVPDASVPNGSPRPRGRPKKIVPPGGAPPITPTADGGAARGRGRPRGVLPIIRAGRLQKLAVGRAKNPARRPVGRPKGSTAAAISAHKVANEDLRKKLEHFQAKVKESLGMLKPYFNHESPVTAIAAIQELEVLSTLDLKAALREETHQQPEPLPQTQVVYEQQYAPQVPQQPQLQQFFQPHTSAQN* 426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu2g3379 425 MobiDBLite consensus disorder prediction 1 35 - -
Pvu2g3379 425 CDD H15 33 112 IPR005818 GO:0000786|GO:0003677|GO:0006334
Pvu2g3379 425 PANTHER HISTONE H1-LIKE 8 391 - -
Pvu2g3379 425 SMART h15plus2 33 99 IPR005818 GO:0000786|GO:0003677|GO:0006334
Pvu2g3379 425 PANTHER HISTONE H1 8 391 - -
Pvu2g3379 425 Pfam linker histone H1 and H5 family 36 96 IPR005818 GO:0000786|GO:0003677|GO:0006334
Pvu2g3379 425 MobiDBLite consensus disorder prediction 403 425 - -
Pvu2g3379 425 Gene3D - 32 115 IPR036388 -
Pvu2g3379 425 Coils Coil 322 342 - -
Pvu2g3379 425 MobiDBLite consensus disorder prediction 298 318 - -
Pvu2g3379 425 SUPERFAMILY "Winged helix" DNA-binding domain 32 109 IPR036390 -
Pvu2g3379 425 PRINTS AT-hook-like domain signature 117 127 IPR017956 GO:0003677
Pvu2g3379 425 PRINTS AT-hook-like domain signature 205 216 IPR017956 GO:0003677
Pvu2g3379 425 PRINTS AT-hook-like domain signature 248 258 IPR017956 GO:0003677
Pvu2g3379 425 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 35 104 IPR005818 GO:0000786|GO:0003677|GO:0006334
Pvu2g3379 425 SMART AT_hook_2 117 129 IPR017956 GO:0003677
Pvu2g3379 425 SMART AT_hook_2 188 200 IPR017956 GO:0003677
Pvu2g3379 425 SMART AT_hook_2 172 184 IPR017956 GO:0003677
Pvu2g3379 425 SMART AT_hook_2 207 219 IPR017956 GO:0003677
Pvu2g3379 425 SMART AT_hook_2 250 262 IPR017956 GO:0003677
Pvu2g3379 425 SMART AT_hook_2 277 289 IPR017956 GO:0003677
Pvu2g3379 425 SMART AT_hook_2 153 165 IPR017956 GO:0003677
Pvu2g3379 425 SMART AT_hook_2 308 320 IPR017956 GO:0003677
Pvu2g3379 425 MobiDBLite consensus disorder prediction 1 39 - -
Pvu2g3379 425 MobiDBLite consensus disorder prediction 102 286 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu2g3379 Pvu-Chr2 48616976 48620229 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu2g3379 - - pvu:PHAVU_002G328400g 574.318
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu2g3379 2 48616976 48620229 Pvu2g3379 2 48616976 48620229 ECH