Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu2g3354 ATGGGAAGCCACGGATTCAGCAATCACAATAATGGGCAGCAGCAACGGTTAGGCATAACAGAGCCTATCTCATTGGGTGGACCTACTGAATATGATGTGATCAAGACTCGTGAACTTGAGAAGATTGTGAAAATTTGGGTCAAAACCATTAGTCGTGGGAAGGGACTAAATGAAGAACTGGTGCAAGAAGCAAATGCCAAGATTTTCACTTTTGGCTCATATCGACTTGGGGTACATGGCCCTGGAGCAGATATAGACATTCTTTGTGTGGGGCCAAGATATGCATCCAGAGATGAAGATTTCTTTGGCGAGCTGCATAAGATGCTATCTGAGATGACAGAAGTAACAGAGTTGCACCCTGTGCCTGATGCTCATGTACCAGTGATGAGGCTCAAGCTCAATGGCGTTTCAATAGATCTTCTATATGCAAAATTATCTTTGTGGGTCATTCCTGAAAACTTGGATATATCACAGGAGTCAATATTACAAAATGCAGATGAGCAAACTGTTCGTAGTCTTAATGGTTGTAGAGTCACTGATCAGGTCTTGCGTTTGGTTCCAAATATTCAGGAGAATTTTCGTACAACATTGAAGTGCATGAAGTTTTGGGCAAAGCATCGTGGTGTTTATTCGAATGTTACAGGTTTTCTTGGTGGTATAAACTGGGCATTGCTTGTTGCACTAATATGCCAGCTTTTTCCTAATGCAGTGCCCAATATGTTAGTGTCTCGATTCTTCAGAGTATATACCAAGTGGCGTTGGCCAAATCCAGTAATGCTTTGTGGCATTGAAGAGGGGTCACTTGGCCTTCAAGTTTGGGACCCTAGAAGACATCCCAAGGATAGATCCCATCTAATGCCAATAATTACTCCTGCTTATCCTTGCATGAACTCTAGCTACAATGTGTCCTCAAGTACATTGCGTATTATCATGAAGGAATTTCAGAGGGGAAATGAAATATGTGAGGCTATGGAGGCTAACAAGGCTGATTGGGACACTCTTTTTGAGCCTCATCCCTTTTTTGAAGCTTATAAGAACTATTTGCAGATAGACATATCAGCAGAGAATGCAGATGATCTTAGAAAATGGAAAGGGTGGGTTGAGTCTCGCCTGCGCCACTTGACATTGAAAATTGAGAGGCACACCTATGACATGCTTCAGTGTCATCCACATCCTGGTGACTTTCCTGACAAATCCAGACCTTACCACTGCTCCTACTTCATGGGACTACAACGTAAGCAAGGTGTTCCTCTGAGTGGTGCTCAGAAGTTTGATATAAGACCAACTGTTGAAGAATTTAAGCATTCTGTGAACATGTACACTCTATGGAAACCTGGAATGGATGTCCATGTCTCCCATGTGAAACGTGATAGTATACCCTCCTTCGTTTTTCCTGGTGCTGTTAGACCTTCACACCCATCTAAAGTAACTTGGCACAGTAAGAGGAGTTCAGAATTAAGTACTTTTGGCCATGCTCATGCAGAAGAGTCTGAAGAAGGTAAAGTTTTTGTATTGGGAGGAAATGGTGATAGGAAGAGAAAAGTAGGTGAAGATAGTGTGGATACCTTGAGAAGTTCGAAGTCCCTTGCATCTTTGTCTCCCTGCAGCAGGGAAGTTGATGAAGATGGAAATCCTGATAGCATTGGTAGTTGTTGGTATGAGAAATGTGATGACTCAGAAATGAATGGTAGTGGTGAAGAACAGGGTGAGAAACCTGATTTGGAAGATGGTGAAAAGGTAGCCATTGAGAAGATTAAGTGTGGTCCATGTGATTCACTTGCACAGCATGTCTTTTCAGAGGAACCTGATGAGCTCACACCACCATTATTAACTGAGATGCCTCCACCT 1848 0.4264 MGSHGFSNHNNGQQQRLGITEPISLGGPTEYDVIKTRELEKIVKIWVKTISRGKGLNEELVQEANAKIFTFGSYRLGVHGPGADIDILCVGPRYASRDEDFFGELHKMLSEMTEVTELHPVPDAHVPVMRLKLNGVSIDLLYAKLSLWVIPENLDISQESILQNADEQTVRSLNGCRVTDQVLRLVPNIQENFRTTLKCMKFWAKHRGVYSNVTGFLGGINWALLVALICQLFPNAVPNMLVSRFFRVYTKWRWPNPVMLCGIEEGSLGLQVWDPRRHPKDRSHLMPIITPAYPCMNSSYNVSSSTLRIIMKEFQRGNEICEAMEANKADWDTLFEPHPFFEAYKNYLQIDISAENADDLRKWKGWVESRLRHLTLKIERHTYDMLQCHPHPGDFPDKSRPYHCSYFMGLQRKQGVPLSGAQKFDIRPTVEEFKHSVNMYTLWKPGMDVHVSHVKRDSIPSFVFPGAVRPSHPSKVTWHSKRSSELSTFGHAHAEESEEGKVFVLGGNGDRKRKVGEDSVDTLRSSKSLASLSPCSREVDEDGNPDSIGSCWYEKCDDSEMNGSGEEQGEKPDLEDGEKVAIEKIKCGPCDSLAQHVFSEEPDELTPPLLTEMPPP 616
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu2g3354 616 Gene3D - 181 335 - -
Pvu2g3354 616 MobiDBLite consensus disorder prediction 487 521 - -
Pvu2g3354 616 MobiDBLite consensus disorder prediction 1 20 - -
Pvu2g3354 616 CDD NT_PAP_TUTase 58 186 - -
Pvu2g3354 616 Pfam Poly(A) polymerase central domain 18 337 IPR007012 GO:0004652|GO:0043631
Pvu2g3354 616 Pfam Nucleotidyltransferase domain 56 119 IPR002934 GO:0016779
Pvu2g3354 616 SUPERFAMILY PAP/Archaeal CCA-adding enzyme, C-terminal domain 338 465 IPR011068 GO:0003723|GO:0016779|GO:0031123
Pvu2g3354 616 Pfam Poly(A) polymerase predicted RNA binding domain 398 470 IPR007010 GO:0003723|GO:0043631
Pvu2g3354 616 Pfam Poly(A) polymerase predicted RNA binding domain 340 398 IPR007010 GO:0003723|GO:0043631
Pvu2g3354 616 PANTHER POLY(A) POLYMERASE-LIKE PROTEIN 39 606 - -
Pvu2g3354 616 PANTHER POLY(A) POLYMERASE-LIKE PROTEIN 1 42 - -
Pvu2g3354 616 SUPERFAMILY Nucleotidyltransferase 15 184 IPR043519 -
Pvu2g3354 616 MobiDBLite consensus disorder prediction 1 23 - -
Pvu2g3354 616 Gene3D Beta Polymerase, domain 2 37 180 IPR043519 -
Pvu2g3354 616 PANTHER POLY A POLYMERASE 1 42 - -
Pvu2g3354 616 PANTHER POLY A POLYMERASE 39 606 - -
Pvu2g3354 616 MobiDBLite consensus disorder prediction 557 578 - -
Pvu2g3354 616 SUPERFAMILY PAP/OAS1 substrate-binding domain 190 337 - -
Pvu2g3354 616 Gene3D Poly(A) polymerase predicted RNA binding domain 339 454 - -
Pvu2g3354 616 MobiDBLite consensus disorder prediction 487 525 - -
Pvu2g3354 616 MobiDBLite consensus disorder prediction 559 578 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu2g3354 Pvu-Chr2 48440342 48445171 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu2g3354 K14376 - gmx:100816915 884.019
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu2g3354 2 48440342 48445171 Pvu2g3354 2 48440342 48445171 ECH