Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu2g3334 ATGAGCCGGCCAATGGAGGAAGATACTGCGGTTAAGAATGAGGAAGAGGAATTCAACACTGGACCACTATCTGTACTAATGATGAGTGTTAAAAGTAATACCCAGGTATTGATAAATTGTCGGAACAACAAAAAGCTTCTGGGTCGTGTAAGAGCATTTGATAGACATTGCAACATGGTTCTTGAAAATGTTAGGGAGATGTGGACTGAGGTGCCCAAGACTGGTAAAGGAAAGAAAAAGGCACAGCCAGTGAACAAGGATAGATTCATCAGCAAAATGTTCCTACGTGGAGATTCTGTCATCATTGTTCTTAGGAACCCCAAATGA 327 0.4159 MSRPMEEDTAVKNEEEEFNTGPLSVLMMSVKSNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNPK* 109
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu2g3334 108 Pfam LSM domain 30 103 IPR001163 -
Pvu2g3334 108 CDD Sm_D2 18 107 IPR027248 GO:0008380|GO:0030532
Pvu2g3334 108 Gene3D - 16 108 - -
Pvu2g3334 108 PANTHER SMALL NUCLEAR RIBONUCLEOPROTEIN SM D2 1 108 - -
Pvu2g3334 108 SUPERFAMILY Sm-like ribonucleoproteins 21 106 IPR010920 -
Pvu2g3334 108 SMART Sm3 26 105 IPR001163 -
Pvu2g3334 108 PANTHER SMALL NUCLEAR RIBONUCLEOPROTEIN SM D2 1 108 IPR027248 GO:0008380|GO:0030532
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu2g3334 Pvu-Chr2 48268283 48271545 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu2g3334 K11096 - gmx:100500203 214.542
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu2g3334 2 48268283 48271545 Pvu2g3334 2 48268283 48271545 ECH