Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu2g3244 TCTGCCAACTATGCATCTTTGGTGACAGCTCAGCTTGTTGTGTTGACATCACACATGGCCGGGCTGGGACTTCCTGATAACGATGCTTGGTACATGATTGAAACAATTGCAGAGAGGAACAGCATTGGATCCAAGCAATTTATAAAAATCAGAGGGTTCTTATCTCATATCCAGCAATTACGTAATGGATACTGGGGAATCTCCTCAGTAAAGGCACAGTCTGTGTTATCACATGCAATGCCATCCCCACATTCTAAAGACGCCAAAGATGAGAACCAACAACCCACTGAGGCAACAGGTGTTGGTAGAAGCTGGGTGCAGAGTATGTTTACAAGAAATACAACAACTAGATCCAGCTCATTTAGTCATGTTCGTAGATGGACGTCGGATGGAGGCACAGTTCTAGCTACAAATGATAATGGGACTCCTCGCAAACAAGATCTGTTAAGTGGTGGCCAGAAAAAGCTTCAAACCAATGTTCGCACACTTAGGGGTCATAATGGTGCCATTACTGCTCTCCATTGTGTTACAAAAAGAGAAGTGTGGGATTTGGTGGGTGACCGTGAAGATGCTGGTTTCTTTATTAGTGGAAGCACAGATTGCTCAGTTAAGATCTGGGATCCTAGTCTTCGTGGGTCTGAACTCAGGGCAACTTTAAAAGGGCATACTAGAACTGTACGGGCCATAAGCTCAGATAGGGGGAAGGTGGTGTCAGGATCTGATGATCACTCTGTTTTGGTGTGGGATAAGCAAACAACTCAACTACTAGAAGAGCTTAAAGGCCATGATGGACCGGTCAGCTGTGTGCGCACGCTCTCAGGGGAACGGGTGCTAACTGCATCTCATGATGGCACTGTGAAGATGTGGGATGTGAGAACTGATAGATGTGTTGCAACTGTTGGTCGTTGCTCTAGTGCTGTTCTGTGCATGGAATATGATGACAATGTGGGAGTGTTGGCTGCTGGTGGAAGAGACGTGGTTGCTAACATATGGGACATCCGAGCTAGTAGGCAGATGCATAAACTTTCAGGACACACACAATGGATACGGTCCGTAAGAATGGTTGGTGATACTGTGATTACCGGTAGTGATGATTGGACCGCAAGAATATGGTCTGTTTCCCGAGGAACCTGTGATGCTGTCCTAGCTTGCCATGCAGGGCCAATATTATGTGTTGAATATTCCTCTTTAGACAGAGGAATAATTACAGGGTCCACTGATGGCCTGCTACGTTTTTGGGAAAATGATGACGGAGGCATACGGTGTGCAAAAAATGTAACAATTCACAATGCTGCCATATTATCTGTCAATGCCGGGGAGCACTGGTTAGGCATTGGAGCAGCTGATAATTCTTTGTCGCTCTTTCATCGGCCCCAAGAAAGACTGGGTGGCTTTTCTGGTGCTGGGTCCAAGATGGCTGGTTGGCAGCTTTACAGAACACCTCAGAAAACAGTTGCTATGGTGAGATGTGTTGCTTCAGACTTAGAAAGGAAAAGGATATGCAGCGGCGGTCGCAATGGGCTTCTTAGGCTGTGGGATGCAACCATTAATATTTGA 1557 0.4618 SANYASLVTAQLVVLTSHMAGLGLPDNDAWYMIETIAERNSIGSKQFIKIRGFLSHIQQLRNGYWGISSVKAQSVLSHAMPSPHSKDAKDENQQPTEATGVGRSWVQSMFTRNTTTRSSSFSHVRRWTSDGGTVLATNDNGTPRKQDLLSGGQKKLQTNVRTLRGHNGAITALHCVTKREVWDLVGDREDAGFFISGSTDCSVKIWDPSLRGSELRATLKGHTRTVRAISSDRGKVVSGSDDHSVLVWDKQTTQLLEELKGHDGPVSCVRTLSGERVLTASHDGTVKMWDVRTDRCVATVGRCSSAVLCMEYDDNVGVLAAGGRDVVANIWDIRASRQMHKLSGHTQWIRSVRMVGDTVITGSDDWTARIWSVSRGTCDAVLACHAGPILCVEYSSLDRGIITGSTDGLLRFWENDDGGIRCAKNVTIHNAAILSVNAGEHWLGIGAADNSLSLFHRPQERLGGFSGAGSKMAGWQLYRTPQKTVAMVRCVASDLERKRICSGGRNGLLRLWDATINI* 519
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu2g3244 518 MobiDBLite consensus disorder prediction 77 101 - -
Pvu2g3244 518 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 219 249 - -
Pvu2g3244 518 ProSiteProfiles Trp-Asp (WD) repeats profile. 259 299 IPR001680 GO:0005515
Pvu2g3244 518 Gene3D - 110 336 IPR015943 GO:0005515
Pvu2g3244 518 PRINTS G protein beta WD-40 repeat signature 236 250 IPR020472 -
Pvu2g3244 518 PRINTS G protein beta WD-40 repeat signature 277 291 IPR020472 -
Pvu2g3244 518 PRINTS G protein beta WD-40 repeat signature 359 373 IPR020472 -
Pvu2g3244 518 ProSiteProfiles Trp-Asp (WD) repeats profile. 304 341 IPR001680 GO:0005515
Pvu2g3244 518 PANTHER DENN DOMAIN-CONTAINING PROTEIN 3 86 518 - -
Pvu2g3244 518 ProSiteProfiles Trp-Asp (WD) repeats profile. 382 414 IPR001680 GO:0005515
Pvu2g3244 518 ProSitePatterns Trp-Asp (WD) repeats signature. 277 291 IPR019775 -
Pvu2g3244 518 MobiDBLite consensus disorder prediction 132 151 - -
Pvu2g3244 518 PANTHER C-MYC PROMOTER BINDING PROTEIN 86 518 - -
Pvu2g3244 518 Pfam WD domain, G-beta repeat 217 249 IPR001680 GO:0005515
Pvu2g3244 518 Pfam WD domain, G-beta repeat 158 207 IPR001680 GO:0005515
Pvu2g3244 518 Pfam WD domain, G-beta repeat 254 290 IPR001680 GO:0005515
Pvu2g3244 518 Pfam WD domain, G-beta repeat 338 372 IPR001680 GO:0005515
Pvu2g3244 518 Pfam WD domain, G-beta repeat 377 413 IPR001680 GO:0005515
Pvu2g3244 518 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 382 414 - -
Pvu2g3244 518 SMART WD40_4 252 290 IPR001680 GO:0005515
Pvu2g3244 518 SMART WD40_4 335 372 IPR001680 GO:0005515
Pvu2g3244 518 SMART WD40_4 474 513 IPR001680 GO:0005515
Pvu2g3244 518 SMART WD40_4 156 207 IPR001680 GO:0005515
Pvu2g3244 518 SMART WD40_4 375 414 IPR001680 GO:0005515
Pvu2g3244 518 SMART WD40_4 419 456 IPR001680 GO:0005515
Pvu2g3244 518 SMART WD40_4 212 249 IPR001680 GO:0005515
Pvu2g3244 518 SMART WD40_4 293 332 IPR001680 GO:0005515
Pvu2g3244 518 CDD WD40 159 455 - -
Pvu2g3244 518 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 259 293 - -
Pvu2g3244 518 ProSitePatterns Trp-Asp (WD) repeats signature. 500 514 IPR019775 -
Pvu2g3244 518 ProSiteProfiles Trp-Asp (WD) repeats profile. 189 207 IPR001680 GO:0005515
Pvu2g3244 518 Gene3D - 337 518 IPR015943 GO:0005515
Pvu2g3244 518 SUPERFAMILY WD40 repeat-like 120 514 IPR036322 GO:0005515
Pvu2g3244 518 ProSiteProfiles Trp-Asp (WD) repeats profile. 342 381 IPR001680 GO:0005515
Pvu2g3244 518 ProSiteProfiles Trp-Asp (WD) repeats profile. 219 258 IPR001680 GO:0005515
Pvu2g3244 518 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 342 376 - -
Pvu2g3244 518 ProSitePatterns Trp-Asp (WD) repeats signature. 319 333 IPR019775 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu2g3244 Pvu-Chr2 47591151 47597610 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu2g3244 149 465 Acyl Lipid Metabolism Gene Families AT3G18860 25.705 2.13e-15 77.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu2g3244 - - pvu:PHAVU_002G3153001 1046.19
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu2g3244 2 47591151 47597610 Pvu2g3244 2 47591151 47597610 ECH