Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu2g3080 ATGGGGTGTTGCTGCACCAAAGAGCGACTTGATCATGAAGATCCACCATTTCTTGCTTCCCAAACCTATTTTAAAGTTTCTGACATTGAAGCATTGCATGTTCTGTACAAGAAATTAAGCAGCTCCATGGTGGACGACGGGGTTATCAGCAAAGAAGAGTTTCAGCTTGGCGTACTTGGAAGCAGCAAGAAACAAAGCTTCTTTACTGACAGGTTATTTCAATTATTTGACTCAAATAAAGATGGGGTGATAGAATTTGGAGAGTTCATTCGAGGTCTAAGTGTCTTCCACCCATCAGCACCACAGGCACAAAAAGCAGACTTTGCATTTCGACTCTATGATATATGTCAAAGAGGCTTTATGGAACGTGACGAGGTAAGAGAGATGGTATTGGCACTACTGAATGAGTCAGATCTGGTTCTGTCTCATGACATTATTGAGGTCGTAATTGATAAGACCTTCGAAGAAGCAGACTCAAAAGGAGATGGAAGAATTGATCCAGAGGAGTGGCAAGATTTTGTTGGTCGAAAACCAATCTTATTGAGAAATATGAATATTCCCTATTTGAAGGATCTGAATAGACAGTTTCCCTGCTTTAAACAAACATCAGGCATTGAAGACTATACAAGCAGCTCATCCCCTGAGAAAGACAACAGTAGCTCCTTAGAAGGACAATCTCAACAGTGTCAACATCAATATTACGCAAATAAAAGAGATAACCTTTGA 726 0.4022 MGCCCTKERLDHEDPPFLASQTYFKVSDIEALHVLYKKLSSSMVDDGVISKEEFQLGVLGSSKKQSFFTDRLFQLFDSNKDGVIEFGEFIRGLSVFHPSAPQAQKADFAFRLYDICQRGFMERDEVREMVLALLNESDLVLSHDIIEVVIDKTFEEADSKGDGRIDPEEWQDFVGRKPILLRNMNIPYLKDLNRQFPCFKQTSGIEDYTSSSSPEKDNSSSLEGQSQQCQHQYYANKRDNL* 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu2g3080 241 ProSitePatterns EF-hand calcium-binding domain. 77 89 IPR018247 -
Pvu2g3080 241 SMART efh_1 149 177 IPR002048 GO:0005509
Pvu2g3080 241 SMART efh_1 68 96 IPR002048 GO:0005509
Pvu2g3080 241 SMART efh_1 105 133 IPR002048 GO:0005509
Pvu2g3080 241 ProSiteProfiles EF-hand calcium-binding domain profile. 64 99 IPR002048 GO:0005509
Pvu2g3080 241 PANTHER CALCINEURIN B 1 206 IPR045198 GO:0005509|GO:0019722|GO:0019900
Pvu2g3080 241 ProSiteProfiles EF-hand calcium-binding domain profile. 145 180 IPR002048 GO:0005509
Pvu2g3080 241 PRINTS Recoverin family signature 10 24 - -
Pvu2g3080 241 PRINTS Recoverin family signature 72 93 - -
Pvu2g3080 241 PRINTS Recoverin family signature 119 137 - -
Pvu2g3080 241 CDD EFh 105 174 IPR002048 GO:0005509
Pvu2g3080 241 CDD EFh 45 94 IPR002048 GO:0005509
Pvu2g3080 241 SUPERFAMILY EF-hand 15 190 IPR011992 -
Pvu2g3080 241 PANTHER CALCINEURIN B-LIKE PROTEIN 5 1 206 - -
Pvu2g3080 241 Pfam EF hand 72 91 IPR002048 GO:0005509
Pvu2g3080 241 Pfam EF hand 150 174 IPR002048 GO:0005509
Pvu2g3080 241 ProSiteProfiles EF-hand calcium-binding domain profile. 101 136 IPR002048 GO:0005509
Pvu2g3080 241 MobiDBLite consensus disorder prediction 205 241 - -
Pvu2g3080 241 Gene3D - 15 208 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu2g3080 Pvu-Chr2 46173199 46175907 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu2g3080 22 199 EF-hand Containing Proteins AT5G24270 57.865 8.72e-77 229
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu2g3080 K06268 - vra:106766823 420.239
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu2g3080 2 46173199 46175907 Pvu2g3080 2 46173199 46175907 ECH