Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu2g3009 ATGGATGTGTTGCTGTCATTATGTGTTCTTTTAGTTGCTTTGCCAAACGTGGCTGTAGTGGAGAGCCGCAAAGCTCCGGTTCTGGACTACTTTGAGTATTGTGCTATGAGCTGCAGAGCTTATAGTGCCTCATTGGAAGAATTTGGAGGTGTTGGTGATGGAACAACTTTGAACACCAAAGCCTTTCAGGCAGCCATAGATCATCTGAGTCAGTATGCATCGAGTGGAGGGTCTCAACTTTATGTTCCCCCAGGAAGATGGTTAACTGGCAGCTTCAATCTCACCAGCCATTTCACTTTATTCCTACACAAGGATGCTGTGATTCTCGCCTCTCAGGATGAAAATGACTGGCCAGTAATTGATCCCTTGCCATCTTACGGTAGAGGGAGGGACACCCAAGGTGGAAGGTTTAGCAGCCTAATTTTTGGGACCAACCTCACTGATGTAATCATAACTGGGGCCAATGGAACATTGGATGGACAAGGTGATCTGTGGTGGCAAAAATTCCACAAGGGGGAGCTCAAATATACCCGGCCTTACCTGATTGAAATAATGTACTCAGATAATGTTCAGATATCCAATCTCACTTTGGTGAACTCTCCATCGTGGAATGTTCATCCTGTATACAGCAGCAACGTTGTTGTTCAAGGGGTCACAATTCTTGCTCCTGTGACATCTCCAAATACAGATGGAATCAACCCTGACTCTTGCACAAACACAAGAATTGAAGACTGTTATATTGTGTCCGGGGATGACTGTGTGGCTGTGAAGAGTGGTTGGGATGAGTATGGTATAGCTTATGGAATGCCAACAAAGCAACTTGTAATCAGAAGACTCACTTGTATTTCTCCATTCAGTGCTGTGATTGCTTTAGGGAGTGAGATGTCTGGTGGGATCCAAGATGTGAGAGCTGAGGACATTGTAGCCATCAATACAGAATCAGGGGTTAGAATCAAAACTGCTGTAGGAAGAGGAGGATATGTTAAGGACATATATGTCAGAAGAATGACCATGAAAACCATGAAATGGGCATTTTGGATGACAGGAAATTACGGGTCCCATGCTGATGACAAGTATGATCCTAATGCACTTCCTGTGATTCAGAACATAAACTATCGTGATATGGTTGCTGAGAATGTCACTATGGCTGCGAGGTTGGAGGGTATCTCTGGTGACCCTTTTACTGGAATCTGCATATCTAATGTAACCATTCAACTGGCAAAGAAGGCTAAAAAAGTTCCATGGACTTGCACTGATATTGATGGGATTTCAAGCGATGTCACTCCTGCACCATGTAATCTGTTGCCAGAACAAGGAGAAGAGAATATTGGAGCATGTACCTTCCCAGAAGAAAGTTTGCCAATTGAAGATGTCCAGGTTCAAACGTGCACTTACAGTAGGAATTTATGA 1410 0.4383 MDVLLSLCVLLVALPNVAVVESRKAPVLDYFEYCAMSCRAYSASLEEFGGVGDGTTLNTKAFQAAIDHLSQYASSGGSQLYVPPGRWLTGSFNLTSHFTLFLHKDAVILASQDENDWPVIDPLPSYGRGRDTQGGRFSSLIFGTNLTDVIITGANGTLDGQGDLWWQKFHKGELKYTRPYLIEIMYSDNVQISNLTLVNSPSWNVHPVYSSNVVVQGVTILAPVTSPNTDGINPDSCTNTRIEDCYIVSGDDCVAVKSGWDEYGIAYGMPTKQLVIRRLTCISPFSAVIALGSEMSGGIQDVRAEDIVAINTESGVRIKTAVGRGGYVKDIYVRRMTMKTMKWAFWMTGNYGSHADDKYDPNALPVIQNINYRDMVAENVTMAARLEGISGDPFTGICISNVTIQLAKKAKKVPWTCTDIDGISSDVTPAPCNLLPEQGEENIGACTFPEESLPIEDVQVQTCTYSRNL* 470
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu2g3009 469 PANTHER PECTIN LYASE-LIKE SUPERFAMILY PROTEIN 6 466 - -
Pvu2g3009 469 SUPERFAMILY Pectin lyase-like 35 437 IPR011050 -
Pvu2g3009 469 Gene3D - 33 427 IPR012334 -
Pvu2g3009 469 Pfam Glycosyl hydrolases family 28 138 412 IPR000743 GO:0004650|GO:0005975
Pvu2g3009 469 PANTHER PECTIN LYASE-RELATED 6 466 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu2g3009 Pvu-Chr2 45571487 45574158 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu2g3009 1 465 Glycoside Hydrolase AT3G61490 68.710 0.0 713
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu2g3009 - - gmx:100785841 914.064
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu2g3009 2 45571487 45574158 Pvu2g3009 2 45571487 45574158 ECH