Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu2g2998 ATGTCTTCCCCTAGCAAACGCCGAGACATGGACCTGATGAAACTGATGATGAGTGATTACAAGGTGGAGATGATCAACGATGGCATGCAAGAGTTCTTTGTGGAATTCCGGGGACCTAAAGATAGTCCCTATGAGGTTGGTGTGTGGAAGATAAAGGTGGAGCTACCTGATGCTTATCCCTATAAGTCTCCATCTATTGGCTTTGTCAACAAAATTTTCCATCCTAATGTTGATGAACTGTCTGGTGCTGTATGCTTAGATGTTATTAACCAGACTTGGAGTCCCATGTTTGACCTTGTTAATGTGTTTGAGGTGTTTCTTCCTCAACTTCTTCTGTATCCCAATGCATCAGATCCATTGAATAGTGATGCTGCCTTGATGATCCGAGATCATGCTACATATGAACAAAGGGTCAAAGAATATTGTGAGAAATATGCCAAGCCAGAAGACATTGGAGCCGTAGAGGATCCAGATTCTAGCGAGGATGAGCTGAGTGAAGAAGATTCTTATGCCTCTAGTGATGATGCCATCGTTGGCCAACCTGATCCTTAG 552 0.433 MSSPSKRRDMDLMKLMMSDYKVEMINDGMQEFFVEFRGPKDSPYEVGVWKIKVELPDAYPYKSPSIGFVNKIFHPNVDELSGAVCLDVINQTWSPMFDLVNVFEVFLPQLLLYPNASDPLNSDAALMIRDHATYEQRVKEYCEKYAKPEDIGAVEDPDSSEDELSEEDSYASSDDAIVGQPDP* 184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu2g2998 183 Pfam Ubiquitin-conjugating enzyme 11 141 IPR000608 -
Pvu2g2998 183 CDD UBCc 10 142 IPR000608 -
Pvu2g2998 183 SMART ubc_7 4 147 - -
Pvu2g2998 183 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 1 147 IPR000608 -
Pvu2g2998 183 PANTHER UBIQUITIN-CONJUGATING ENZYME E2-21 KDA 1 3 183 - -
Pvu2g2998 183 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 3 183 - -
Pvu2g2998 183 Gene3D Ubiquitin Conjugating Enzyme 1 156 IPR016135 -
Pvu2g2998 183 SUPERFAMILY UBC-like 4 147 IPR016135 -
Pvu2g2998 183 MobiDBLite consensus disorder prediction 148 183 - -
Pvu2g2998 183 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 73 89 IPR023313 -
Pvu2g2998 183 MobiDBLite consensus disorder prediction 155 170 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu2g2998 Pvu-Chr2 45427184 45430187 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu2g2998 3 149 Miscellaneous Gene Families AT3G17000 24.375 1.17e-06 45.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu2g2998 K10576 - gmx:100791133 325.094
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu2g2998 2 45427184 45430187 Pvu2g2998 2 45427184 45430187 ECH