Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu2g2934 ATGGATGCAATTAACAACCTACTCAACCTTGCATTGCCTCCACTTTCCCTAATATTCCTCTCCATTTTAATGCTACCTTGGCTCATATTCAAGCAGCTTGTTCATGTAAGAAAATCACTAAGCAAGGAAAACGTGGCAAGCAAAGTTGTATTAATCACCGGAGCAGCCTCAGGAATTGGCGAGGAAATAGCGTATGAATATGCAAGGCGAGGAGCAAAGCTTTCCCTGGTTGACATAAGAAAGGAAAAGCTTGAGGCAGTGGGTGATAAGGCACGATCTCTGGGTTCTCCTGATGTTGCCATCATTGGTGCTGATGTATCCAAGGTTCAAGACTGCAAACTCTTTGTTCATGAAACTATCAACTACTTTGGAAGACTGGATCATCTGGTAAATAATGCGGGAATCGGCGGTAAGTCTGTGAGGGTGGAGAATTTGCGTCATGTTTCCGACTGTGCTGCAGTTATGGATGTAAACTTTTGGGGAGCAGTTAATGCGACATTATATGCTACCCCACATCTGAAAATTAATAAAGGAAGGATTATAGTGATTGCTTCAGTTTCCGGATGGTTTCCAATGCCACTGATAAGTATCTATAATGCTAGCAAAGCAGCGATAATAAGTTTCTTTGAGACTCTGAGAATGGAAGTTGGTTGTACTATCGCCATAACAATTGCCACGCCGGGTCTTATCAATACACACCTTACGAGGGCCCTGAAATTGGACAAGGTTGCTTTGGGAAAAGTTCCACTGGGGTCAGCTAATGAGTGTGCTAAAGCCATAGTTGAAAGTGCATGCAGGGGAGATATGTATGTTACATATCCATCCTGGTACAAAGTGTTGTTTCCTTGGAAGCTGCTTCATCCTCAATTCGTAGATTGGGCCTGCAACTTAGCCTCTGGGCCTTATCCCAAGAAATCTCCCATCAAACCCAATCTCAAGATGCCAGAGCATAAGGCAGAATAA 963 0.4341 MDAINNLLNLALPPLSLIFLSILMLPWLIFKQLVHVRKSLSKENVASKVVLITGAASGIGEEIAYEYARRGAKLSLVDIRKEKLEAVGDKARSLGSPDVAIIGADVSKVQDCKLFVHETINYFGRLDHLVNNAGIGGKSVRVENLRHVSDCAAVMDVNFWGAVNATLYATPHLKINKGRIIVIASVSGWFPMPLISIYNASKAAIISFFETLRMEVGCTIAITIATPGLINTHLTRALKLDKVALGKVPLGSANECAKAIVESACRGDMYVTYPSWYKVLFPWKLLHPQFVDWACNLASGPYPKKSPIKPNLKMPEHKAE* 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu2g2934 320 Gene3D - 30 300 - -
Pvu2g2934 320 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 44 294 IPR036291 -
Pvu2g2934 320 PANTHER RETINOL DEHYDROGENASE-RELATED 1 297 - -
Pvu2g2934 320 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 124 135 IPR002347 -
Pvu2g2934 320 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 178 186 IPR002347 -
Pvu2g2934 320 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 198 217 IPR002347 -
Pvu2g2934 320 ProSitePatterns Short-chain dehydrogenases/reductases family signature. 185 213 IPR020904 GO:0016491
Pvu2g2934 320 PRINTS Glucose/ribitol dehydrogenase family signature 49 66 IPR002347 -
Pvu2g2934 320 PRINTS Glucose/ribitol dehydrogenase family signature 124 135 IPR002347 -
Pvu2g2934 320 PRINTS Glucose/ribitol dehydrogenase family signature 172 188 IPR002347 -
Pvu2g2934 320 PRINTS Glucose/ribitol dehydrogenase family signature 198 217 IPR002347 -
Pvu2g2934 320 PRINTS Glucose/ribitol dehydrogenase family signature 218 235 IPR002347 -
Pvu2g2934 320 PANTHER 11-BETA-HYDROXYSTEROID DEHYDROGENASE-LIKE 6 1 297 - -
Pvu2g2934 320 Pfam short chain dehydrogenase 48 239 IPR002347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu2g2934 Pvu-Chr2 44859692 44862724 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu2g2934 43 251 Acyl Lipid Metabolism Gene Families AT1G24360 32.243 1.97e-17 79.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu2g2934 K22418 - gmx:100808990 400.593
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu2g2934 2 44859692 44862724 Pvu2g2934 2 44859692 44862724 ECH