Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu2g2880 ATGGGAGAACAGAAGCGAATCCCTCTTGGGATCTTTGCAGTGCTCCTCTTGATCGCTGCCTCTTCTTTTCAGCTTCTCCGCGCTTCTGAAGATGCAGATGACGCGATCTTCTACGAGTCATTCGATGAGGATTTTGAAGGTCGTTGGATCGTGTCTCAGAAAGATGAATATAGTGGTGTCTGGAAACATGCCAAGAGTGAGGGACATGATGATCATGGTCTTCTTGTCAGTGAGAAAGCAAGAAAATATGCTATAGTGAAGGAACTTGACGGGGCAGTGAGTCTCAAGGATGGAACTGTTGTTCTTCAGTTTGAAACTCGGCTTCAGAATGGACTTGAATGTGGAGGAGCATATATAAAATATCTCCGACCACAGGATGCTGGATGGAAATCTAAGGAATTTGACAACGAATCTCCGTATTCTATCATGTTTGGTCCTGATAAGTGTGGTGCCACAAACAAAGTACACTTCATTTTCAAACACAAGAATCCCAAGACTGGGGAGTATGTTGAGCACCATCTTAAGAATCCCCCTTCTGTCCCTTCTGATAAATTAACTCATGTGTACACGGCTATTTTGAAGCCTAACAATGAGGTGCTAATTTTGCTTGACGGGGAACAGAAGAAGAAGGCAGACTTCTTAAGTGCTGATGATTTTGAACCTCCACTTATCCCGACCAAGACAATCCCAGATCCAGATGATAAGAAGCCTGAGGACTGGGATGAGAGAGAGAAAATTCCAGACCCAATTGCTGTAAAGCCAGATGACTGGGATGAGGAAGCACCCTTGGAAATTGTTGATGAAGAAGCTGAAAAACCTGAAGGATGGTTAGACGATGAACCTGAGGAGATAGATGATCCAGAGGCAACAAAACCAGAAGATTGGGATGATGAGGAGGATGGTGAATGGGAAGCCCCAAAGATTGAGAACCCAAAATGTGAAGCCGCCCCAGGCTGTGGTGAGTGGAAAAGGCCAACGAAGTCGAATCCAGCTTATAAAGGAAAATGGTATGCCCCACTTATTGAAAATCCAGCTTATAAGGGTATATGGAAGCCTAGGGATATTCCAAACCCTGCTTACTTTGAACTTAAAAAACCTGATTTTGAGCCAATCGCTGCTATTGGTATCGAGATTTGGACAATGCAAGATGGCATTTTGTTTGACAACATCTTGATAGCTAAAGATGATAAAATTGCTGAGTCCTATCGGGAGACTACATGGAAACCCAAGTTTTCAGTTGAAAAAGAAAAACAGAAGGAAGAGGAAACTGAAGCTGGATCAAGTGGTATTGCAGGCTTCCAGAAGAAGGTATTTGACCTCTTATACAAGATCGCAGACATCCCCTTCCTGAGTGCCTATAAGCCTAAAATCCATGATCTCATCCAGAAGGGTCAAGAGCAACCCAATCTCACAGTTGGAATTCTTGTAGCCATTTTGGTCGTCTTTGTGTCAGTTTTCTTCAAGATCATATTTGGTGGGAAAAAGAAGCCCACAAGGGTGGAGAAGACAAACTTAGAACCCTCCGAAAGTGCCTCTAACCAAACAAATGGTGAGAATGAAGAAAACAAAGAGAAGGAGGAATCATCTGCCCCTCCACGTCGGAGGTCAGCAAGGAGAGATAATTGA 1626 0.436 MGEQKRIPLGIFAVLLLIAASSFQLLRASEDADDAIFYESFDEDFEGRWIVSQKDEYSGVWKHAKSEGHDDHGLLVSEKARKYAIVKELDGAVSLKDGTVVLQFETRLQNGLECGGAYIKYLRPQDAGWKSKEFDNESPYSIMFGPDKCGATNKVHFIFKHKNPKTGEYVEHHLKNPPSVPSDKLTHVYTAILKPNNEVLILLDGEQKKKADFLSADDFEPPLIPTKTIPDPDDKKPEDWDEREKIPDPIAVKPDDWDEEAPLEIVDEEAEKPEGWLDDEPEEIDDPEATKPEDWDDEEDGEWEAPKIENPKCEAAPGCGEWKRPTKSNPAYKGKWYAPLIENPAYKGIWKPRDIPNPAYFELKKPDFEPIAAIGIEIWTMQDGILFDNILIAKDDKIAESYRETTWKPKFSVEKEKQKEEETEAGSSGIAGFQKKVFDLLYKIADIPFLSAYKPKIHDLIQKGQEQPNLTVGILVAILVVFVSVFFKIIFGGKKKPTRVEKTNLEPSESASNQTNGENEENKEKEESSAPPRRRSARRDN* 542
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu2g2880 541 SUPERFAMILY P-domain of calnexin/calreticulin 222 362 IPR009033 GO:0005509|GO:0005515
Pvu2g2880 541 MobiDBLite consensus disorder prediction 214 304 - -
Pvu2g2880 541 MobiDBLite consensus disorder prediction 499 541 - -
Pvu2g2880 541 MobiDBLite consensus disorder prediction 260 304 - -
Pvu2g2880 541 PRINTS Calreticulin signature 109 127 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Pvu2g2880 541 PRINTS Calreticulin signature 138 154 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Pvu2g2880 541 PRINTS Calreticulin signature 236 249 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Pvu2g2880 541 PRINTS Calreticulin signature 284 306 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Pvu2g2880 541 PRINTS Calreticulin signature 341 360 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Pvu2g2880 541 PRINTS Calreticulin signature 373 393 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Pvu2g2880 541 MobiDBLite consensus disorder prediction 229 259 - -
Pvu2g2880 541 Pfam Calreticulin family 37 392 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Pvu2g2880 541 ProSitePatterns Calreticulin family repeated motif signature. 284 296 IPR018124 GO:0005509
Pvu2g2880 541 Gene3D Calreticulin/calnexin, P domain 222 366 IPR009033 GO:0005509|GO:0005515
Pvu2g2880 541 Gene3D - 37 402 - -
Pvu2g2880 541 PANTHER CALRETICULIN AND CALNEXIN 13 196 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Pvu2g2880 541 PANTHER CALRETICULIN AND CALNEXIN 196 541 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Pvu2g2880 541 ProSitePatterns Calreticulin family signature 2. 142 150 IPR018124 GO:0005509
Pvu2g2880 541 ProSitePatterns Calreticulin family signature 1. 107 122 IPR018124 GO:0005509
Pvu2g2880 541 PANTHER - 13 196 - -
Pvu2g2880 541 PANTHER - 196 541 - -
Pvu2g2880 541 SUPERFAMILY Concanavalin A-like lectins/glucanases 34 242 IPR013320 -
Pvu2g2880 541 MobiDBLite consensus disorder prediction 518 541 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu2g2880 Pvu-Chr2 44410675 44414420 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu2g2880 11 541 Miscellaneous Gene Families AT5G61790 73.734 0.0 781
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu2g2880 K08054 - gmx:100810595 898.656
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu2g2880 2 44410675 44414420 Pvu2g2880 2 44410675 44414420 ECH