Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu2g2817 ATGGGAAATAAAGAGTCAACGCATGATTCTCATGCTGGTTTTTTCCAGCAACCCCCTTCATCTGATGGAAGTTCAGAAAATACTAGCCATCAATATCGTCAAACTTCTTCCTTCGATGGAAGTTCAGCAAATGCTAGCCATCAATATCATCACTCCCCTTCCTATGATGGAACTTCAGTGAATACTAGCTATCAATATCATCAACCGGTTCAACCTTCTTCATATGCTGGGAGTTCGGTGAATACCAAACAGCAGCATAAGCAGCGACCCACATATATAGCTGACAATTTCAGTTCATTGGATCAGGTTGTTTCCGCTTTGAGAGAAGCTGGTTTGGAGTCTTCAAATCTTATAATTGGTATTGACTTCACCAAAAGCAATGAGTGGACAGGCAAATATTCTTTCAACCATAAAAGCCTTCATTATATTGGAAACACTCCTAATCCATATGAGCAAGCGATCTCTATTATTGGCCGTACTCTCTCTTCGTTTGATGAAGACAATCTGATACCATGTTTTGGATTTGGTGATGCATCGACACATGATCAAAATGTCTTCAGCTTTTATCCTGATGATCGCTATTGTCATGGTTTTGAGGAAGTACTTGCACGCTACCGAGAGATTGTGCCACAATTAAAATTGGCAGGTCCAACATCATTTGCCCCTGTAATCGATGCAGCAGTTGATATTGTGGAAAGAAGCGATGGTCAGTACCATGTTCTTGTCATTATTGCTGATGGACAGGTTACTAGAAATTCAGGTACACCACATGGAAAGTTTAGTCCACAAGAACAAGCAACTATTAATTCTATCATTGCTGCGAGTCACCATCCCCTCTCAATTATTTTGGTTGGAGTTGGAGATGGTCCATGGGATGAAATGCAGCACTTCGATGATTGCATTACTCAGCGCTTATTTGACAACTTTCAGTTTGTGAATTTCACAAAGATCATGTCTGAGAACAAAGATGCATCAAAGAAGGAAGCAGCATTTGCACTTGCTGCCCTTATGGAAATTCCAATTCAGTACCGGGTGACCCAAAGCCTACAATTTGGAAATGAAAAGTCAATTACCTACCAACGTAGAAGGCCTTTTCCTCCGCCTAAGGAAGTAATAGATCGTGACAATGCAGTTCTAGCAGTTCCAAAATTTGAATCAGTTGAGCCATCAGCTCCAGCTACAGTAGAATCAGCGTGCCCTATTTGCTTAACCAATCCGAAGGACATGGCTTTTGGATGTGGTCATACAACTTGCAAGGAGTGTGGCGTAACATTATCTTCATGCCCTATGTGTCGGCAGCCAATTACAACTCGCCTGAGACTATACACTTGA 1332 0.4152 MGNKESTHDSHAGFFQQPPSSDGSSENTSHQYRQTSSFDGSSANASHQYHHSPSYDGTSVNTSYQYHQPVQPSSYAGSSVNTKQQHKQRPTYIADNFSSLDQVVSALREAGLESSNLIIGIDFTKSNEWTGKYSFNHKSLHYIGNTPNPYEQAISIIGRTLSSFDEDNLIPCFGFGDASTHDQNVFSFYPDDRYCHGFEEVLARYREIVPQLKLAGPTSFAPVIDAAVDIVERSDGQYHVLVIIADGQVTRNSGTPHGKFSPQEQATINSIIAASHHPLSIILVGVGDGPWDEMQHFDDCITQRLFDNFQFVNFTKIMSENKDASKKEAAFALAALMEIPIQYRVTQSLQFGNEKSITYQRRRPFPPPKEVIDRDNAVLAVPKFESVEPSAPATVESACPICLTNPKDMAFGCGHTTCKECGVTLSSCPMCRQPITTRLRLYT* 444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu2g2817 443 SUPERFAMILY vWA-like 115 298 IPR036465 -
Pvu2g2817 443 MobiDBLite consensus disorder prediction 1 89 - -
Pvu2g2817 443 SMART VWA_4 114 317 IPR002035 -
Pvu2g2817 443 Pfam Zinc finger, C3HC4 type (RING finger) 396 437 - -
Pvu2g2817 443 CDD vWA_copine_like 93 343 IPR010734 -
Pvu2g2817 443 PANTHER COPINE FAMILY PROTEIN 1 68 442 - -
Pvu2g2817 443 Pfam Copine 139 349 IPR010734 -
Pvu2g2817 443 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RGLG3 68 442 - -
Pvu2g2817 443 CDD RING-HC_RGLG_plant 399 442 IPR045317 GO:0061630|GO:0070534
Pvu2g2817 443 SUPERFAMILY RING/U-box 392 438 - -
Pvu2g2817 443 Gene3D von Willebrand factor, type A domain 131 319 IPR036465 -
Pvu2g2817 443 SMART ring_2 399 431 IPR001841 -
Pvu2g2817 443 MobiDBLite consensus disorder prediction 9 89 - -
Pvu2g2817 443 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 387 443 IPR013083 -
Pvu2g2817 443 ProSiteProfiles Zinc finger RING-type profile. 399 432 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu2g2817 Pvu-Chr2 43841333 43849228 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu2g2817 K16280 - gmx:100791316 758.444
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu2g2817 2 43841333 43849228 Pvu2g2817 2 43841333 43849228 ECH