Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu2g2789 ATGAAGGGTGGTACGATTCAGATTTCCTGGCACGAGGGCAAACCCGTCTTAACCCTCGATTTCCACCCTCTCTCCGCCACTCTCGCCACCGCCGGGGCCGATTTCGACATCAAGTTTTGGTCGATAAGTCCCGCCGGGACGCAGAAGCTTCCCGTAGCTTCCTATCTTAGTAACCTCTCTTACCATAGCACTGCAGTGAATGTTATTCGCTTCTCTTCTTCCGGGGAATTGCTGGCCTCTGGTGCTGATGGAGGGGACCTGCTAATATGGAAGCTACATTCCGCCGATACTGGTCAGACATGGAAGGTTCTCAAGATGTTACGATCTCATCTCAAGGACATTTTGGACCTGCAGTGGTCTACCGATGGCACATATATCATATCTGGATCAGTTGATAATAGTTGCATTATATGGGATGTTAACAAAGGAACTAACCTTCAGACGTTGGAGACCCATGCGCACTATGTTCAGGGGGTTGCATGGGACCCTCTAGGAAAATATGTTTCTTCTCTTAGTTCTGATAGGACTTGCAGAATTTACATGAATAAGCCTCATAAATCAAAGGGCACTGAGAAAATCAATTATGTTTGCCAGCAAGTCATTTCTAAGGCAGATCAACCATTATTAAAAAATTCTCAGGATACAAAATTTCACCTCTTCCACGATGAGACATTGCCATCTTTTTTCAGAAGATTAGCATGGTCTCCTGATGGTTCATTTTTAATTGTGCCTGCAGGCTCTTACAAAATTAATAATGCATCCGAGTCTGTGAATGCTGCTTACATAATTTCTAGGAAAGATCTTTCTAGGCCTGCCATACAGCTCCCTTGTGCAAGTAAAGCTGTTGTAGCGGTCCGGTTCTGTCCCATGATTTTTAAACTTCAGGGAACGAATTCACTCAACTCAGCTGGGGCATTCAACCTCCCATATCGCATCATATTTGCTGTGGCCACTTTGAATTCACTGTACATTTTTGACACCGAAAGCACATCTCCGTTAGCTGTATTAGCTGGTCTTCACTATGCCGCAATAACAGATATTACCTGGTCATCTGATGCTCATTATTTGGCGTTGTCATCACAAGATGGTTTCTGCTCTTTGGTGGAATTTGAGAATGACGAACTTGGATCACCTTACTCTTTATCTGAAGGAAAAGCCAAGGAGGATAGTATGAGTAATTTACAGACAGGCAATGACATTGTAATGCAAGAGAAGCCTGACAACATGGTCATTGAGGCAACTGGGAATGTTGAAGGGGTTATAGCTGATAGTAGGAAAAATGAAGCAGAAGAGAAAACTGATGACATGATCATTGAAACAAGTGGAAGAATTGGCACTGCTGAATTAGATAGAAGAAAAGCGAAACCAGATAAGGCAACGAAACAGCAATGGAATTCGTGTGCTGTAAATTTTGGAGCTCAAGACAAGGCTGAGAAACAGCCCGCTAATCCAGATTCAGAGGGAAAACAAACGGAATCAAGGGAGAAGACAGCTCTACAATCAAGTTTGGACGGTAAATCGGGTGCAGAAGAAAAGTCTGGGCAACAATTTTCCAGTTCGAAGAGTACACCCTTGTCAAATAAGCCAGCCAAGAAGCGTATTACTCCTATTGCCATTGATCCATGA 1626 0.4354 MKGGTIQISWHEGKPVLTLDFHPLSATLATAGADFDIKFWSISPAGTQKLPVASYLSNLSYHSTAVNVIRFSSSGELLASGADGGDLLIWKLHSADTGQTWKVLKMLRSHLKDILDLQWSTDGTYIISGSVDNSCIIWDVNKGTNLQTLETHAHYVQGVAWDPLGKYVSSLSSDRTCRIYMNKPHKSKGTEKINYVCQQVISKADQPLLKNSQDTKFHLFHDETLPSFFRRLAWSPDGSFLIVPAGSYKINNASESVNAAYIISRKDLSRPAIQLPCASKAVVAVRFCPMIFKLQGTNSLNSAGAFNLPYRIIFAVATLNSLYIFDTESTSPLAVLAGLHYAAITDITWSSDAHYLALSSQDGFCSLVEFENDELGSPYSLSEGKAKEDSMSNLQTGNDIVMQEKPDNMVIEATGNVEGVIADSRKNEAEEKTDDMIIETSGRIGTAELDRRKAKPDKATKQQWNSCAVNFGAQDKAEKQPANPDSEGKQTESREKTALQSSLDGKSGAEEKSGQQFSSSKSTPLSNKPAKKRITPIAIDP* 542
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu2g2789 541 PANTHER CHROMATIN ASSEMBLY FACTOR 1 SUBUNIT B 1 531 IPR045145 GO:0006335
Pvu2g2789 541 SUPERFAMILY WD40 repeat-like 13 381 IPR036322 GO:0005515
Pvu2g2789 541 PRINTS Beta G protein (transducin) signature 107 123 IPR001632 -
Pvu2g2789 541 PRINTS Beta G protein (transducin) signature 126 140 IPR001632 -
Pvu2g2789 541 PRINTS Beta G protein (transducin) signature 163 180 IPR001632 -
Pvu2g2789 541 MobiDBLite consensus disorder prediction 495 529 - -
Pvu2g2789 541 ProSitePatterns Trp-Asp (WD) repeats signature. 126 140 IPR019775 -
Pvu2g2789 541 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 59 94 - -
Pvu2g2789 541 Gene3D - 215 399 IPR015943 GO:0005515
Pvu2g2789 541 SMART WD40_4 2 41 IPR001680 GO:0005515
Pvu2g2789 541 SMART WD40_4 100 139 IPR001680 GO:0005515
Pvu2g2789 541 SMART WD40_4 329 369 IPR001680 GO:0005515
Pvu2g2789 541 SMART WD40_4 52 91 IPR001680 GO:0005515
Pvu2g2789 541 SMART WD40_4 142 181 IPR001680 GO:0005515
Pvu2g2789 541 Gene3D - 4 209 IPR015943 GO:0005515
Pvu2g2789 541 MobiDBLite consensus disorder prediction 423 438 - -
Pvu2g2789 541 ProSiteProfiles Trp-Asp (WD) repeats profile. 59 100 IPR001680 GO:0005515
Pvu2g2789 541 MobiDBLite consensus disorder prediction 423 541 - -
Pvu2g2789 541 ProSiteProfiles Trp-Asp (WD) repeats profile. 107 148 IPR001680 GO:0005515
Pvu2g2789 541 PANTHER CHROMATIN ASSEMBLY FACTOR 1 SUBUNIT B 1 531 - -
Pvu2g2789 541 MobiDBLite consensus disorder prediction 445 459 - -
Pvu2g2789 541 ProSiteProfiles Trp-Asp (WD) repeats profile. 149 180 IPR001680 GO:0005515
Pvu2g2789 541 MobiDBLite consensus disorder prediction 480 494 - -
Pvu2g2789 541 Pfam WD domain, G-beta repeat 102 139 IPR001680 GO:0005515
Pvu2g2789 541 Pfam WD domain, G-beta repeat 10 41 IPR001680 GO:0005515
Pvu2g2789 541 Pfam WD domain, G-beta repeat 59 91 IPR001680 GO:0005515
Pvu2g2789 541 Pfam WD domain, G-beta repeat 143 180 IPR001680 GO:0005515
Pvu2g2789 541 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 107 143 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu2g2789 10 197 Miscellaneous Gene Families AT5G08390 25.123 6.75e-11 63.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu2g2789 K10751 - gmx:100784411 818.535
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu2g2789 2 43647509 43651778 Pvu2g2789 2 43647509 43651778 ECH