Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu2g2608 ATGGTTATAGCAGAATGTAACAGAGTTGATCACTGTGTCCTCATAATCTCATGCCTCGGTTTAATCGTCACGCTCCGCCTCCTCCTCTCCCTCTCCACCTGGATCTTCCGAACCTGCTTCCGATCCGAGAAGAACCTCATCCGAACCTACGGTTCCTGGGCTCTGGTCACCGGAGCCACCGACGGCATCGGCAAGGCTTTCGCCTGCCAGCTGGCACAGCGAGGGCTCAACCTCATCCTCGTGAGCAGAACCTTGCAGAAGCTGGAAGCTGTTGCGCGTGAAATCAAGGCGAAGCATCCAAACGCGCGCGTGAAGGTGGTGGAGATAGACTTCGCGAGCGGGGATCTGTCGGAGGGTCTGCAGCGCGTGGAGGAGGCGAGTGAGGGGTTGGATGTTGGCGTGTTGGTGAACAACGTGGGGATGACGTATCCGCATGCGATGTTTTTCGACGAAGTCGAGGAAAGTGTGTGGAGGAAGATCGTTAGAGTGAACGTGGAAGGAACAACGAAAGTAACGAAATGTGTTCTGCGTGGGATGTTGGAAAGGAGAAAGGGAGCCATCGTTAACATTGGCTCCGGTGCTGCACTCGTTCTTCCTTCTCATCCTCTCTTCACTGTCTATGCTGCCACCAAGGCTTACGTGGATCAATTCTCAAGATCTCTGTACGTGGAGTATGGACAATATGGGATACATGTGCAATGTCAGGTACCACTGTACGTTGCAACAAATATGGTATCAAGGGTGGCTTGTATTCAGAGAGATTCGTTGTTTATACCTACAGCTGAGGCTTATGCAAGAGCTGCAATTGCTGAAATTGGGTTCCAAGCAACGTGCATACCTTATTGGGCTCACTCTTTTCAGGGCTTCTTAGCACACTTAATCCCTCACCCTCTGCTTGATTCCTGGCGATTATCCATCGGTATTCGCCGCCGGAACAATCAAAACCAATCCTCATTCACTTCAACTTTATCTCCATGA 978 0.5123 MVIAECNRVDHCVLIISCLGLIVTLRLLLSLSTWIFRTCFRSEKNLIRTYGSWALVTGATDGIGKAFACQLAQRGLNLILVSRTLQKLEAVAREIKAKHPNARVKVVEIDFASGDLSEGLQRVEEASEGLDVGVLVNNVGMTYPHAMFFDEVEESVWRKIVRVNVEGTTKVTKCVLRGMLERRKGAIVNIGSGAALVLPSHPLFTVYAATKAYVDQFSRSLYVEYGQYGIHVQCQVPLYVATNMVSRVACIQRDSLFIPTAEAYARAAIAEIGFQATCIPYWAHSFQGFLAHLIPHPLLDSWRLSIGIRRRNNQNQSSFTSTLSP* 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu2g2608 325 PANTHER RH59310P 13 315 - -
Pvu2g2608 325 PRINTS Glucose/ribitol dehydrogenase family signature 53 70 IPR002347 -
Pvu2g2608 325 PRINTS Glucose/ribitol dehydrogenase family signature 130 141 IPR002347 -
Pvu2g2608 325 PRINTS Glucose/ribitol dehydrogenase family signature 179 195 IPR002347 -
Pvu2g2608 325 PRINTS Glucose/ribitol dehydrogenase family signature 207 226 IPR002347 -
Pvu2g2608 325 PRINTS Glucose/ribitol dehydrogenase family signature 228 245 IPR002347 -
Pvu2g2608 325 Pfam short chain dehydrogenase 53 247 IPR002347 -
Pvu2g2608 325 Gene3D - 45 281 - -
Pvu2g2608 325 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 130 141 IPR002347 -
Pvu2g2608 325 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 185 193 IPR002347 -
Pvu2g2608 325 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 207 226 IPR002347 -
Pvu2g2608 325 CDD 17beta-HSD1_like_SDR_c 51 295 - -
Pvu2g2608 325 PANTHER ENOYL-(ACYL CARRIER) REDUCTASE 13 315 - -
Pvu2g2608 325 PIRSF 11-beta-HSD1 3 317 - -
Pvu2g2608 325 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 47 303 IPR036291 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu2g2608 Pvu-Chr2 41998102 42000723 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu2g2608 19 312 Lipid Metabolism Gene Families AT1G24470 56.610 5.98e-120 346
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu2g2608 K10251 - rcu:8285440 376.711
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu2g2608 2 41998102 42000723 Pvu2g2608 2 41998102 42000723 ECH
Pvu2g2608 2 41998102 42000723 Pvu1g2656 1 51341883 51344973 PCT