Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu2g1887 ATGGATCTTCACGAAAACCCCCAGAATTCTGGGATGAAGAAACGAAAGCCGGAGCAGGATGATGCTTTGATCAGTGATCATGGAAATTCTATGAGTGTAGGAGAGTCATCTGGGAGTGGTGATCTCTGCAAGAGTTCTACCTCGGGATCACTGAATTCAAACAATCAAAATGGTTCCACTTCTGACATTTCATGTCCAGAAGATGAGGATATGATTGATGATGATGCAGATATGATTGATGATGATGATGCAGATGAAGATGCTGATTATGCTTTTGGTTACAATGATGATATTTATGAAGATGATTATTCAAGTATGCAGGATCAATTTGACAGTGTGGATTTACCTCCTGGGGTGGAGGCATCCCTGCCTTGGTTGAAGGACATTTCTTCTAGTGAATGCAAGCAAGCTGTTGCCTTTCCCCGTACAGAATCTAGTTCGAAGGGAAAGGTGGATGAAACTAATGATACGGTCATGCAGAAGTTTCAACAATTCAAGCAATTTGATACTGTTGATTCTTTTCCTGATCATCACTATGATAAGGAGGGAACTTCAGAGTCACAGAAACCTAAAAATTGGGCCAAAAAGATCCAGGAGGAATGGAAAATTTTAGAGGAAAATCTGCCTGACACAATCTTTGTGAGAGTTAGTGAATCAAAGATGGAGCTTCTAAGGGTTGTCATCATTGGACCTCAAGGCACCCCATATCATGATGGTCTTTTCTTTTTTGATTGCCTCTTTCCTTCTTGCTATCCTGCAGTTCCACCGAAAGTTCACTACCACTCAGGTGGCCTAAGACTAAATCCAAATTTATATCAATGTGGAAAAGTCTGCCTTAGTCTTTTGGGAACTTGGCATGGTAAGAATAGTGAGAACTGGATTACAGAAAAATCAACCATGCTACAAGTATTGGTTTCAATACAAGCTCTAATTCTAAACGAGAAGCCTTTCTTTAATGAGCCTGGATATATATCAACATATCCTGGTGCGGAGGGGCAAAGAAGATCTAAGGAGTACAATGAGAATACATTTATTTTATCCTTGAAGACAATGATGTATACCCTGCGTAAACCTCCAAAGCCCTTTGAGGATTTTGTTGCAGGGCATTTCCGAAACCGAGCATATTTCCTGCTGACAGCATGTAAATCATACGTGGAGGGGGCTCCGGTTGGGTCGGTTGTACATAATCTAGTTCCAAGTATTAGTTCTACAACTGCGGCTAACGGCCAAAAGGAATTCCAGTCAGCTGTGAGTAGGATGATGAATACTCTTATTGCATTTTTCACCAAAAATGGCTCCACAGACTGTGATGAGTTTCGATCTCTTGAGATTTATAACTTGTCTTCTGTGGCTACTGCAAACTTAGAGGTTTACAAGATAGAGTCTTCTGGCACAACAACATTGACCCAGGTGTGA 1416 0.4096 MDLHENPQNSGMKKRKPEQDDALISDHGNSMSVGESSGSGDLCKSSTSGSLNSNNQNGSTSDISCPEDEDMIDDDADMIDDDDADEDADYAFGYNDDIYEDDYSSMQDQFDSVDLPPGVEASLPWLKDISSSECKQAVAFPRTESSSKGKVDETNDTVMQKFQQFKQFDTVDSFPDHHYDKEGTSESQKPKNWAKKIQEEWKILEENLPDTIFVRVSESKMELLRVVIIGPQGTPYHDGLFFFDCLFPSCYPAVPPKVHYHSGGLRLNPNLYQCGKVCLSLLGTWHGKNSENWITEKSTMLQVLVSIQALILNEKPFFNEPGYISTYPGAEGQRRSKEYNENTFILSLKTMMYTLRKPPKPFEDFVAGHFRNRAYFLLTACKSYVEGAPVGSVVHNLVPSISSTTAANGQKEFQSAVSRMMNTLIAFFTKNGSTDCDEFRSLEIYNLSSVATANLEVYKIESSGTTTLTQV* 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu2g1887 471 MobiDBLite consensus disorder prediction 25 64 - -
Pvu2g1887 471 SUPERFAMILY UBC-like 177 359 IPR016135 -
Pvu2g1887 471 MobiDBLite consensus disorder prediction 1 89 - -
Pvu2g1887 471 Pfam Ubiquitin-conjugating enzyme 197 322 IPR000608 -
Pvu2g1887 471 PANTHER UBIQUITIN-CONJUGATING ENZYME 15 441 - -
Pvu2g1887 471 SMART ubc_7 195 352 - -
Pvu2g1887 471 MobiDBLite consensus disorder prediction 66 89 - -
Pvu2g1887 471 PANTHER (E3-INDEPENDENT) E2 UBIQUITIN-CONJUGATING ENZYME 15 441 - -
Pvu2g1887 471 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 192 352 IPR000608 -
Pvu2g1887 471 MobiDBLite consensus disorder prediction 1 23 - -
Pvu2g1887 471 CDD UBCc 195 342 IPR000608 -
Pvu2g1887 471 Gene3D Ubiquitin Conjugating Enzyme 150 431 IPR016135 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu2g1887 Pvu-Chr2 33668230 33672442 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu2g1887 164 436 Miscellaneous Gene Families AT2G33770 52.000 7.26e-87 283
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu2g1887 K10581 - gmx:100812552 794.267
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu2g1887 2 33668230 33672442 Pvu2g1887 2 33668230 33672442 ECH