Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu2g1724 ATGGCTTCCTCACTGTCCTCCGTCATCAACCAACCTCACATTGCTCAACGCTTCAAACTTCACCGTCCATCTTCTTTTGCCACTTTCACAATCTTCCACCACAAACGCAAACACAAACACCAATACAATGTGTTTTCTCCACACCCTTATACCTCATCGCCACGCTCTCGCTCTCTCAATCTTATCATCGCTTCCAGAACCTTCTCTCATTCCAACACTCTCCGCCACCATTTCATCCCTCAAGCCACGCTCACTGCTTCCGAAGCTCAACCCCGCCTTGTGCCAGATGCTGAAGTTCCTCCCACTCGTCGAATATATCATGAGACTTATGGATGTCAAATGAATGTTAATGATATGGAGATCGTTCTTTCTATAATGAAAAAAGCCGGTTACAGTGAAGTTGTGAGTGCTCCCGAGAGTGCAGAAATAATATTCATCAATACCTGTGCCATTAGAGAAAACGCTGAACAGAAAGTATGGCAGAGGCTTAATTACTTTTGGTTTCTTAAGAGGCATTGGAAGAGCAATGTTGCTACTGGAAGAGCAGAGTCTCTGTACCCTCCCAAAGTAGTGGTTTTGGGATGTATGGCTGAGAGGTTAAAGGAGAAGATACTTGATTCAGACAAAATGGTTGACGTAGTATGCGGGCCTGATGCTTATAGGGATTTGCCACGCTTACTGGAGGAGGTTGACTATGGTCAAAAAGGGATCAATACTCTCCTTTCACTTGAGGAGACTTATGCTGATATTAACCCTGTTAGAATCTCCAAGAACTCGGTTACTGCATTTGTCTCAGTGATGAGAGGTTGCAATAATATGTGTTCGTTTTGTATTGTTCCTTTCACCAGAGGTAGAGAGCGATCACGTCCGGTGGAGTCAATTGTGAGAGAGGTAGCTGAGCTTTGGAAAGAGGGTGTTAAGGAGGTAACGCTTCTTGGCCAGAATGTAAACAGCTACAACGATGCAGCTGGGAGTGAGAGTGAGGTTGAATCAGGGTCCAATTGGCAACTTAGTGAAGGGTTTTCTAGTATGGCTAAGGTAAAAAAAATGGGCTTGAGATTTTCTGATCTACTGGATCGATTATCCTCAGAATTTCCTGAGATGCGATTCAGATTCACTTCTCCACACCCTAAGGATTTTCCAGATGAGTTGCTTTATCTAATGCGAGACAGACATAATATATGCAAGCTGATACATTTACCTGCACAAACTGGAAGTAGCAAAGTTCTGGAGAGAATGAGAAGAGGATATACCCGAGAGGCTTACTTGGAACTTGTGCAAAAAATCCGGAGTATTATTCCTGATGTGGCTTTGAGCAGTGATTTCATTTGTGGATTTTGTGGAGAAACAGAGGAGGACCATTCTGAGACGTTGACTCTGGTAAATGCTGTTAGTTATGATATGGCATTCATGTTTGCTTATAGCATGAGGGAGAAAACTCATGCCCACAGAAATTATGTTGACGATGTTCCTGAGGAAATTAAACAGAGGAGGCTGGCTGAACTTATTGAGACTTTCCGCGAGAGTACGGGGAAGTGTTTTGACTCTCAGATTGGAACCACACAGCTTGTATTAGTGGAAGGACCCAATAGAAGAGCTCCAGATACTGAGCTTATGGGCAAGAGTGACAAGGGTCATCGGGTGTTGTTCGTCAATATGCCAATCGTAGATAGGGAAGATGTTGGTACAAAGCGAAATCCTGTGGTTGGTGATTATGTTGAAGTTCACATAACAAGATCTACCAGGGCATCACTCTTTGGTGAAGCACTTGCTATAACTAAACTAACCTCATTTTACTATAATCTGAATAAAGAAGCTGTTGCATGCAGCATGTAG 1836 0.433 MASSLSSVINQPHIAQRFKLHRPSSFATFTIFHHKRKHKHQYNVFSPHPYTSSPRSRSLNLIIASRTFSHSNTLRHHFIPQATLTASEAQPRLVPDAEVPPTRRIYHETYGCQMNVNDMEIVLSIMKKAGYSEVVSAPESAEIIFINTCAIRENAEQKVWQRLNYFWFLKRHWKSNVATGRAESLYPPKVVVLGCMAERLKEKILDSDKMVDVVCGPDAYRDLPRLLEEVDYGQKGINTLLSLEETYADINPVRISKNSVTAFVSVMRGCNNMCSFCIVPFTRGRERSRPVESIVREVAELWKEGVKEVTLLGQNVNSYNDAAGSESEVESGSNWQLSEGFSSMAKVKKMGLRFSDLLDRLSSEFPEMRFRFTSPHPKDFPDELLYLMRDRHNICKLIHLPAQTGSSKVLERMRRGYTREAYLELVQKIRSIIPDVALSSDFICGFCGETEEDHSETLTLVNAVSYDMAFMFAYSMREKTHAHRNYVDDVPEEIKQRRLAELIETFRESTGKCFDSQIGTTQLVLVEGPNRRAPDTELMGKSDKGHRVLFVNMPIVDREDVGTKRNPVVGDYVEVHITRSTRASLFGEALAITKLTSFYYNLNKEAVACSM* 612
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu2g1724 611 Pfam Radical SAM superfamily 264 460 IPR007197 GO:0003824|GO:0051536
Pvu2g1724 611 ProSiteProfiles Methylthiotransferase N-terminal domain profile. 103 232 IPR013848 GO:0035596|GO:0051539
Pvu2g1724 611 PANTHER CDK5 REGULATORY SUBUNIT-ASSOCIATED PROTEIN 1 27 601 - -
Pvu2g1724 611 SFLD B12-binding domain containing 186 465 - -
Pvu2g1724 611 SUPERFAMILY Radical SAM enzymes 254 508 - -
Pvu2g1724 611 ProSiteProfiles Radical SAM core domain profile. 256 512 IPR007197 GO:0003824|GO:0051536
Pvu2g1724 611 Pfam TRAM domain 515 590 IPR002792 -
Pvu2g1724 611 SMART MiaB 260 501 IPR006638 GO:0003824|GO:0051536
Pvu2g1724 611 ProSitePatterns Methylthiotransferase radical SAM domain signature. 264 284 IPR020612 GO:0051539
Pvu2g1724 611 ProSiteProfiles TRAM domain profile. 515 591 IPR002792 -
Pvu2g1724 611 Gene3D - 103 246 IPR038135 -
Pvu2g1724 611 TIGRFAM miaB-methiolase: tRNA-i(6)A37 thiotransferase enzyme MiaB 105 588 - -
Pvu2g1724 611 CDD Radical_SAM 268 504 - -
Pvu2g1724 611 Gene3D tm_1862 like domain 258 516 IPR023404 -
Pvu2g1724 611 SFLD (dimethylallyl)adenosine tRNA methylthiotransferase (MiaB-like) 102 591 IPR006463 GO:0006400|GO:0016740|GO:0051539
Pvu2g1724 611 SFLD CDK5RAP1 102 595 - -
Pvu2g1724 611 TIGRFAM TIGR00089: radical SAM methylthiotransferase, MiaB/RimO family 104 585 IPR005839 GO:0006400|GO:0016740|GO:0051539
Pvu2g1724 611 Pfam Uncharacterized protein family UPF0004 104 216 IPR013848 GO:0035596|GO:0051539
Pvu2g1724 611 SFLD methylthiotransferase 102 595 IPR005839 GO:0006400|GO:0016740|GO:0051539
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu2g1724 - - gmx:100799544 1117.83
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu2g1724 2 30982295 30989780 Pvu2g1724 2 30982295 30989780 ECH