Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu2g1722 ATGTTTGGCGCCACCAGACGCGTAGTTGGGTTCATTCCTAGGAGGTTACGACCAGTGCGGCAAGTGCATGGAGATGGGGATGGCGAAGAGCGTTTACACTTTCACAAGAGCAAAGGTCAACACATTCTCATCAACCCTAGAGTTCTTGATACCATCGTTCGCAAATCCGCCATAAATCCAGCAGACACTGTCCTCGAAATCGGACCTGGCACAGGCAACCTCACCCTCAAGCTTCTCGAAGCCGCGCACAAGGTAGTAGCCTTCGAGATTGACCACCGCCTGGTCCAGGTTCTCGAGAAGCGTGTTCTTCAAAGTGGTCTCAAAGATAAGCTCAGGGTTATTGAAAGAGATGCAATGAAAGCCCCGTTTCCGCGGTTTGATCTTGTTGTGGCCAACATTCCTTATCAGATATCGTCCCCTCTCGTGATCAAACTGGTGTATGGGTCGACGCCGTTTCGGAGTGCCACGCTTCTTCTTCAGAAAGAGTTCGCTCGAAGGTTAGTGGCTAATCCCGGTGACTCTGACTTTAGCCGGTTGTCGGTGAATGTGAAGCTTCTGGCTGATGTGGAGCATGTGATGGATGTAAGCAAGAGGGACTTTCTCCCTTCCCCCAAAGTTGATTCTTCTGTGGTCATAATCCGCCCTAAGCCTCAGGTTCCCAATGTGGATCTCCGTGAGTGGAGGGCTTTCACCTCGAGTTGTTTCAATAACCGTAACAAGACACTAGGGGCATCTTTTAAGAACAAGAGGAAAGTCTTTGAGTTGCTCAAAATCTCCAATGAAAACGATAAAGCTTCTTCCCACAAGGGTGATGATGCTGAAGATGATGGAGGCTTTACCTCGTTCAAGGAAAAGATTATTGGGGTGCTTAGAACGGGAGAGTTTGAAGATAAAAGGCCTGCAAAACTTTCTATCGAGGAGCTTCTGCATTTGCTCTCTTTGTTCAATCAAGCTGGCATTTATTTTGCATACCGTGGACATTTCAAGAGGGAAGATAGGTTTGATGCCGATGATGAATAG 1020 0.4794 MFGATRRVVGFIPRRLRPVRQVHGDGDGEERLHFHKSKGQHILINPRVLDTIVRKSAINPADTVLEIGPGTGNLTLKLLEAAHKVVAFEIDHRLVQVLEKRVLQSGLKDKLRVIERDAMKAPFPRFDLVVANIPYQISSPLVIKLVYGSTPFRSATLLLQKEFARRLVANPGDSDFSRLSVNVKLLADVEHVMDVSKRDFLPSPKVDSSVVIIRPKPQVPNVDLREWRAFTSSCFNNRNKTLGASFKNKRKVFELLKISNENDKASSHKGDDAEDDGGFTSFKEKIIGVLRTGEFEDKRPAKLSIEELLHLLSLFNQAGIYFAYRGHFKREDRFDADDE* 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu2g1722 339 ProSiteProfiles rRNA adenine N(6)-methyltransferase family profile. 34 319 IPR001737 -
Pvu2g1722 339 PANTHER RIBOSOMAL RNA SMALL SUBUNIT METHYLTRANSFERASE, MITOCHONDRIAL 23 322 - -
Pvu2g1722 339 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 31 317 IPR029063 -
Pvu2g1722 339 TIGRFAM ksgA: ribosomal RNA small subunit methyltransferase A 34 313 IPR011530 GO:0000179|GO:0006364
Pvu2g1722 339 CDD AdoMet_MTases 63 142 - -
Pvu2g1722 339 Hamap Ribosomal RNA small subunit methyltransferase A [rsmA]. 32 316 IPR011530 GO:0000179|GO:0006364
Pvu2g1722 339 ProSitePatterns Ribosomal RNA adenine dimethylases signature. 64 91 IPR020596 GO:0000154|GO:0000179|GO:0008649
Pvu2g1722 339 SMART rADcneu6 48 217 IPR020598 GO:0000154|GO:0000179|GO:0008649
Pvu2g1722 339 PANTHER DIMETHYLADENOSINE TRANSFERASE 23 322 IPR001737 -
Pvu2g1722 339 Gene3D - 220 323 - -
Pvu2g1722 339 Gene3D Vaccinia Virus protein VP39 34 218 IPR029063 -
Pvu2g1722 339 Pfam Ribosomal RNA adenine dimethylase 33 260 IPR001737 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu2g1722 Pvu-Chr2 30951468 30953175 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu2g1722 K14191 - gmx:100790908 546.584
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu2g1722 2 30951468 30953175 Pvu2g1722 2 30951468 30953175 ECH