Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu2g1646 ATGGCTATGGCAGCAACTTCCTCTACAGCATCTTCCATCCTCCTTCCATTCACAACAAACCCCAAAACCTCTCACCTATTTGCCTCTTTCCCTTGCAAAAACAATACCCTCCTTCCCAGCCTCCGTCTCAGACACATCTCAGCCTCAACCTCAGCTTCAGCAACCCCAACCCCCTCAATCCAAGTTGACAAATCTCCAGTCTCCGCCGCTCCTTCCAAGGTTCTTCCCTTTCGGATCGGCCACGGTTTTGACCTCCATCGCTTGGAACCCGGTTACCCTCTGATCATCGGTGGGATTAACATACCCCACGAAAGAGGTTGCGAGGCCCATTCCGATGGGGACGTTCTGCTTCACTGCGTCGTCGATGCTATTTTGGGGGCGTTAGGTCTTCCTGATATAGGCCAAATATTTCCTGATAATGATCCTAAGTGGAAGGGTTGTGCCTCTTCCGTCTTCATCCATGAATCTGTTAGACTTATGCATGAGGCAGGTTATGAAATTGGAAATTTGGATGCTACATTGATACTTCAGCGGCCAAAACTGAGCCCGCACAAGGACACTATCAAAGCCAACTTATCTGCATTGCTTGGAGTGGACTCTTCTGTGGTAAATATCAAAGCAAAAACTCATGAAAAGGTAGACAGTCTTGGAGAGAATAGAAGTATAGCGGCACACACAGTGGTTCTTCTAATGAAAAAATGA 702 0.4758 MAMAATSSTASSILLPFTTNPKTSHLFASFPCKNNTLLPSLRLRHISASTSASATPTPSIQVDKSPVSAAPSKVLPFRIGHGFDLHRLEPGYPLIIGGINIPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDNDPKWKGCASSVFIHESVRLMHEAGYEIGNLDATLILQRPKLSPHKDTIKANLSALLGVDSSVVNIKAKTHEKVDSLGENRSIAAHTVVLLMKK* 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu2g1646 233 ProSitePatterns 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase signature. 111 126 IPR020555 GO:0008685
Pvu2g1646 233 PANTHER 2-C-METHYL-D-ERYTHRITOL 2,4-CYCLODIPHOSPHATE SYNTHASE, CHLOROPLASTIC 4 233 IPR003526 GO:0008685|GO:0016114
Pvu2g1646 233 CDD MECDP_synthase 78 230 IPR003526 GO:0008685|GO:0016114
Pvu2g1646 233 Gene3D - 74 233 IPR036571 GO:0008685|GO:0016114
Pvu2g1646 233 SUPERFAMILY IpsF-like 76 232 IPR036571 GO:0008685|GO:0016114
Pvu2g1646 233 TIGRFAM ispF: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase 78 232 IPR003526 GO:0008685|GO:0016114
Pvu2g1646 233 PANTHER 2-C-METHYL-D-ERYTHRITOL 2,4-CYCLODIPHOSPHATE SYNTHASE 4 233 - -
Pvu2g1646 233 Hamap 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase [ispF]. 77 232 IPR003526 GO:0008685|GO:0016114
Pvu2g1646 233 Pfam YgbB family 77 230 IPR003526 GO:0008685|GO:0016114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu2g1646 K01770 - gmx:100306378 390.578
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu2g1646 2 30193398 30195748 Pvu2g1646 2 30193398 30195748 ECH