Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu2g1616 ATGAACAACTTCAAGTTAGGCGTAGATGTGATTAGTGCTCACAATCTATTACCTAAAGATGGACTAGGTTCGTCCAATGCCTTTGTGGAACTTTATTTTGATGGCCAGAAGTACCGTTCGACCATCAAAGAAAAGGATCTTAGCCCTGTTTGGAATGAGAGCTTCTACTTCAATATATCTGACCCTTCTAATCTTCACTATCTCTCACTTGAGGTCTATGTCCTCAGCCATTCAAAGGCTACTAACTCCACTTCATTTCTTGGCAAAGTTAGCCTTACTGGGACTTCTTTTGTTCCTTACTCTGATGCAGTTGTCTTACACTATCCATTGGAAAAGCGTGGTATTTTCTCTCGTGTAAGAGGAGAGATTGGTCTTAAAGTTTACATCACTGATGACCCAACCATAAAATCATCTGTTCCAACTCCTGTTGTTGATTACATGCCAACTAATAATCCTAGCTCAACACATGCAGAGGTTCGAGCACCTGCAAGCGCAATGGCAAACAGTTTTCCAAATGAAAATGTTGAGTCAAGGCACACATTTCATCATCTTCCCAACACAAAGCATCACCTGAACCAGCACCAGCAGCATTCAACTGGCTTTGCAGATACTCATTATGTAACAAAGTATGAAGCTGATGAAATGAAGTCTGAACCACAACCCATGAAGCTAGTACGCACAGCTACATCAGGACAACCAGTTGATTTTGCACTTAAAGAAACAAGTCCATATCTTGGCGGGGGAAGAGTTGTTGGTGGTCGTGTTATTCACAAAGACAAAACAGATAGTACATACGATCTTGTAGAAAGGATGTATTTTCTGTATGTGAGGGTTGTGAAGGCTCGTGAGCTTCCTACTATGGATATTACTGGGAGTCTTGATCCATTTGTTGAAGTGAGAATTGGAAATTACAAAGGTATTACCAGACACTTTGATAAGAATCAGAGTCCTGAATGGAATCAGGTGTTTGCCTTCTCAAAGGAGAGGATGCAAGCATCCATACTAGATGTTGTGATAAAGGACAAGGATCTCATCAAAGATGATTTCGTTGGCATTGTGAGGTTTGACATCAATGAGGTTCCTTTGAGAGTCCCACCAGATAGCCCTTTGGCTCCGGAGTGGTACCGTCTTGAGGACAAGAAAGGGGAGAAGATTAAAGGTGAGTTGATGCTTGCTGTATGGATTGGTACTCAAGCAGATGAGGCTTTTTCTGATGCATGGCATTCAGATGCAGCCACCCCTGTTGACAGCACACATGCTATCTCTGCAGTGATGCGTTCAAAGGTGTATCATGCACCAAGGTTATGGTACGTGCGCGTCAATATTGTGGAGGCACAAGACTTGGTTCCTACAGAGAAAAACCGTTTCCCAGATGTGTATGCCAAGGTGCAGATAGGAAACCAAGTGCTGAAAACAAAGACAGTTCCTGCACGAACACTGAGTGCACTCTGGAATGAGGATCTTTTATTTGTTGCTGCTGAACCTTTTGAAGACCATTTAATCATTTCAGTTGAAGATCGGGTTGGTCCTGGGAAAGATGAGATCATTGGGAGGATCATCATACCACTGAACTCTGTGGAGAGGCGTGCGGATGATAGAATCATTCATTCTCGATGGTTCAACTTGGAAAAGCCAGTTGCTATAGATGTGGATCAGTTGAAGAAGGAAAAGTTCTCAAGCAGAATTCAGCTCCGGTTATGTTTAGATGGTGGATATCATGTTCTTGACGAGTCTACTCATTACAGCAGTGATCTCCGTCCCACAGCAAAGCAATTGTGGAAGCCACCAATTGGGGTATTAGAACTTGGAGTACTGAATGCTGTAGGACTCCACCCGATGAAAACAAGGGATGGCAGAGGCACATCTGACACATACTGTGTAGCAAAATACGGTCACAAATGGGTAAGAACAAGGACCATTGTTGACAATCTGTGTCCAAAATACAACGAACAATACACTTGGGAGGTTTTTGATCATGCCACAGTTCTTACGGTTGGTGTCTTCGACAACAGCCAGATCGGGGAAAAGGGCAACGGTACATCGAAGGACTTGAAAGTTGGGAAGGTCAGAATTCGCATCTCTACTTTAGAAACAGGCAGGATTTACACTCACTCATATCCATTGTTGGTTCTTCACCCAACTGGGGTTAAGAAGATGGGTGAACTTCACTTGGCAATACGGTTTTCATGCACTTCTTTAGCAAACATGCTTTACCTGTACTCACGTCCTCTGCTGCCTAAAATGCACTATGTTAGGCCTTTCTCTGTGACACAGCTAGACATGCTACGCCACCAAGCAATGAACATAGTGGCAGCACGACTAGGCCGAGCAGAGCCACCACTTCGCAAGGAAGTGGTGGAATACATGTCGGATGTGGACTCTCACCTTTGGAGCATGCGGCGAAGCAAGGCCAATTTCTTCAGACTGATGACTGTCTTCTCTGGTGTGTTTGCGGTTGGGAAGTGGTTTGGTGAAATCTGCATGTGGAGAAATCCCATCACAACAGTGCTGGTTCATGTGCTGTTTCTCATGCTTGTATGCTTCCCAGAATTGATCTTGCCCACTGTTTTTATCTACATGTTTTTGATAGGGGTGTGGAACTTCAGATATAGACCAAGGTACCCTCCTCACATGAACACAAGAATCTCACAAGCTGAGGCAGTGCACCCAGATGAGTTGGATGAAGAGTTTGACACTTTTCCAACGAGCAGAGACCCTGAACTTGTGAGAATGAGGTATGATCGCTTGAGGAGTGTGGCTGGAAGGATTCAAACAGTGATTGGGGATTTAGCCAGCCAGGGAGAAAGGATTGAGGCACTGTTAAGCTGGAGAGACCCACGTGCTACATCCTTATTCATTACATTATGTCTTCTATCTGCGTTGCTTCTCTACGTTACCCCTTTTCAAGCTGTGGCTGGTTTGGCAGGTTTCTACATCATGAGGCATCCAAGGTTTCGCCACAGGCTGCCATGTGTCCCTATCAACTTCTTCCGACGCCTCCCTGCAAGAACAGACAGCATGTTGTAG 3027 0.4447 MNNFKLGVDVISAHNLLPKDGLGSSNAFVELYFDGQKYRSTIKEKDLSPVWNESFYFNISDPSNLHYLSLEVYVLSHSKATNSTSFLGKVSLTGTSFVPYSDAVVLHYPLEKRGIFSRVRGEIGLKVYITDDPTIKSSVPTPVVDYMPTNNPSSTHAEVRAPASAMANSFPNENVESRHTFHHLPNTKHHLNQHQQHSTGFADTHYVTKYEADEMKSEPQPMKLVRTATSGQPVDFALKETSPYLGGGRVVGGRVIHKDKTDSTYDLVERMYFLYVRVVKARELPTMDITGSLDPFVEVRIGNYKGITRHFDKNQSPEWNQVFAFSKERMQASILDVVIKDKDLIKDDFVGIVRFDINEVPLRVPPDSPLAPEWYRLEDKKGEKIKGELMLAVWIGTQADEAFSDAWHSDAATPVDSTHAISAVMRSKVYHAPRLWYVRVNIVEAQDLVPTEKNRFPDVYAKVQIGNQVLKTKTVPARTLSALWNEDLLFVAAEPFEDHLIISVEDRVGPGKDEIIGRIIIPLNSVERRADDRIIHSRWFNLEKPVAIDVDQLKKEKFSSRIQLRLCLDGGYHVLDESTHYSSDLRPTAKQLWKPPIGVLELGVLNAVGLHPMKTRDGRGTSDTYCVAKYGHKWVRTRTIVDNLCPKYNEQYTWEVFDHATVLTVGVFDNSQIGEKGNGTSKDLKVGKVRIRISTLETGRIYTHSYPLLVLHPTGVKKMGELHLAIRFSCTSLANMLYLYSRPLLPKMHYVRPFSVTQLDMLRHQAMNIVAARLGRAEPPLRKEVVEYMSDVDSHLWSMRRSKANFFRLMTVFSGVFAVGKWFGEICMWRNPITTVLVHVLFLMLVCFPELILPTVFIYMFLIGVWNFRYRPRYPPHMNTRISQAEAVHPDELDEEFDTFPTSRDPELVRMRYDRLRSVAGRIQTVIGDLASQGERIEALLSWRDPRATSLFITLCLLSALLLYVTPFQAVAGLAGFYIMRHPRFRHRLPCVPINFFRRLPARTDSML* 1009
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu2g1616 1008 CDD C2A_MCTP_PRT_plant 5 131 - -
Pvu2g1616 1008 Gene3D C2 domain 418 568 IPR035892 -
Pvu2g1616 1008 Gene3D C2 domain 255 395 IPR035892 -
Pvu2g1616 1008 Gene3D C2 domain 595 732 IPR035892 -
Pvu2g1616 1008 Pfam Plant phosphoribosyltransferase C-terminal 853 1008 IPR013583 -
Pvu2g1616 1008 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 436 589 IPR035892 -
Pvu2g1616 1008 Pfam C2 domain 599 708 IPR000008 -
Pvu2g1616 1008 Pfam C2 domain 274 368 IPR000008 -
Pvu2g1616 1008 Pfam C2 domain 5 93 IPR000008 -
Pvu2g1616 1008 Pfam C2 domain 436 541 IPR000008 -
Pvu2g1616 1008 CDD C2B_MCTP_PRT_plant 273 397 - -
Pvu2g1616 1008 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 598 731 IPR035892 -
Pvu2g1616 1008 CDD C2C_MCTP_PRT_plant 437 587 - -
Pvu2g1616 1008 CDD C2D_MCTP_PRT_plant 599 725 - -
Pvu2g1616 1008 Gene3D C2 domain 1 130 IPR035892 -
Pvu2g1616 1008 ProSiteProfiles C2 domain profile. 415 540 IPR000008 -
Pvu2g1616 1008 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 272 411 IPR035892 -
Pvu2g1616 1008 PANTHER C2 CALCIUM/LIPID-BINDING PLANT PHOSPHORIBOSYLTRANSFERASE FAMILY PROTEIN 4 1008 - -
Pvu2g1616 1008 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 5 149 IPR035892 -
Pvu2g1616 1008 ProSiteProfiles C2 domain profile. 581 706 IPR000008 -
Pvu2g1616 1008 ProSiteProfiles C2 domain profile. 1 108 IPR000008 -
Pvu2g1616 1008 PANTHER C2 CALCIUM/LIPID-BINDING PLANT PHOSPHORIBOSYLTRANSFERASE FAMILY PROTEIN 4 1008 - -
Pvu2g1616 1008 ProSiteProfiles C2 domain profile. 255 375 IPR000008 -
Pvu2g1616 1008 SMART C2_3c 5 106 IPR000008 -
Pvu2g1616 1008 SMART C2_3c 599 705 IPR000008 -
Pvu2g1616 1008 SMART C2_3c 273 369 IPR000008 -
Pvu2g1616 1008 SMART C2_3c 437 535 IPR000008 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu2g1616 Pvu-Chr2 29888489 29893392 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu2g1616 176 1008 Lipid Metabolism Gene Families AT4G11610 78.353 0.0 1404
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu2g1616 - - gmx:100777951 1944.47
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu2g1616 2 29888489 29893392 Pvu2g1616 2 29888489 29893392 ECH