Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu2g1583 ATGGATGATGAGTTTTTTTACGGAAACAAAGCGCCATCTGGTGTCATAAGAGCGATAAAGTTTGATGTCTTAACTGAAAATGATATAGAGAAAGTCTCTGTTTTGGAGATAAATGCAGCCGGGCAGGTCACTGGGTCTACTTTGGGACTTCCAAATACATCTGACGAGTGTGCCACTTGTGGTTCTAAAAACAAAAAGATTTGTGAAGGTCATTTTGGAGTAATCAAATTTCCTTTTCCCATACTCCATCCATATTTTATGTCAGAGATTGCACAAATCTTGAATAAGATTTGCCCTGTTTGTAAATCTATTCGTCATAAATCTAAGGGTGCTCAATTAATCTTTGGAATAAAGCGGTCTATCAATTGCAAATATTGTTCTGGAAATGGGGTGGGCCGTTATCCAGCAATGAAGTTTAAATTTTCGTCCAATGATCTCTACAGAAGAACTGCAATTATTGTTGAAGTGAATGATAAGGCCTCAAAGAAAAGTTTGGGACGAAGCCTGCCAGCTGATTATTGGGATTTTTTACCTTATGATGCTCAACAAGAAGAAAATTATGTAAATAGAAGAGTTTTATCGCCAGGACAGGTTACTTCTTTGTTGAATGATGTTGATCCGAACTTCATTGAAAAATATGTTCCAAGAAATAATTTGATTACTCTTAATTGCTTCCCAGTGACTCCAAATTGTCATCGTGTAACAGAAGTCCCTTATGCAATTTCGAATGGAAACCGATTGAGTTTTGATGACAGGACTCGATCTTGTAAGAAATTGGTTGATTTCAGGGGCACAGCTAATGAGTTAAGTTCTCGTCTAAATCCTGATAAAACACCTATTAGTATTTTTGCTGATATTCAAAAAAAAAAAGTTGCAGAAAATGCTTGCAATTCTTCTGGTTTAAGATGGATAAAAGATGTGATTCTTGGAAAACGCAATGATAGTACGTTCCGCACTGTGGTTGTTGGTGATCCATCCCTTGAGCTCAGTGAAATTGGTATACCTTGTCATATTGCTGAAAGTTTGCAGGTTTCTGAGTATGTTAACAGGCAGAATTTGGAAAAGCTGCTTTATTGTTGTGAGCTACGCCTGTTAGAGAAGGGACAGATAAATGTTTGCAGAAAAGGTAGTTCAATTCATCTGTTTAAAAAGGAAGATCTACAGATAGGAGACCAATTTTATAGGCCTCTTTGTGATGGGGATAAAGTTCTGATAAATAGGCCCCCTTCCATACATCAACATTCTATGATTGCTCTCACTGTTAGGGTCCTTCCAATATCTTCTGTAGTGTGTATTAATCCACTCTGTTGTTCTCCACTTCGTGGGGATTTTGATGGTGATTGCCTTCATGGGTATATTCCACAATCAGTTAGTGCAAGAGTTGAGCTTAGTGAGCTTGTTGCTTTGGATAAGCAATTGTTTAATGGGCAAAGTGGTAGAAATCTGCTTTCACTTTCCGAGGATAGTTTAACTGCTGCATATTTGCTAATGGAAGATGGGGTCCTTTTAGATGTTTACCAGATGCAGCAGCTTCAAATGCTTTGTAACAAAGGTTTAGCTCCTCCTGCAATTGTAAAATCTCCTTCAAGTAACAGCTCATTTTGGAGTGGCAAGCAATTGTTTAGCATGCTCTTGCCTTCTGATTTTGACTATTCATTTCCTTCAGATGGTGTTGTTGTCAGTGATGGGGAGCTTGTATCTTCTTTTGAGGCTTCTGGATGGTTACGTGATTCTGACTGCAATGTTTTCCAGGGTCTTGTGGAGCATTTTCAAGGGAAATCTCTAAACTTTTTGTTTGCTGCGCAGAATGTTTTGTGTGAATGGTTATCTATGACTGGTTTTAGTGTTTCACTCTCAGATTTGTACCTCTCTTCTGATTCCTATGCACGAAAAAACATGATTGAGGAAATCTGTTATGGCTTACAAGATGCAGAGAAGGCGTGTAATTTCAAGCAGTTATTGTTGGATTGTTATTGTGATTTTTTGTCTGGAAATCATGAAGAGAGTGAAAATTCTATGACTGTTGATGCAGATAGTCTGAATTATGAAAGACAAATATCTGCTGCTCTCAGTCAGGCATCAGTTGATGCTTTTAGGCATGTTTTTCGCAATATTCAAAGTTTAGCTGACAAATATGCATGTACAGACAATACTTTTCTTGCCATGAATAAGGCTGGAAGCAAGAGTAGTTTAGTGAGATTAGCGCAACATTCCATGTGCCTTGGCATGCAAAATTCTCTGGTACGTTTATCTTACAGACTGCCCCGCCATCTTTCATGTGCTGCTTGGAATAGTCAAAAGGGGCTTGATTCAATCCAGATATATTCTGGTACCCTTGAATCTGTTCAGTCTTACATTCCATGTGCCGTGGTCAAAAGCTCATTTCTAACTGGGTTAAATCCACTTGAATGTTTTGTTCATTCTGTAACAATCCGAGCTAGTGGTTTTAGTGAAAATGCAGACGTTCCAGGAACATTAACACGGAGACTAATGTTCTTCATGCGTGATTTGTTCGCTGCATATGACGGAACAGTGAGAAATTTATATGGTAATCAACTTATTCAGTTTTCTTATGATATTGACGAGAACACTTCATGTGATAAAAGTTTCAAAGAGTATGCTATTGGTGGTGAACCAGTTGGGGCACTTTCTGCTTCTGCAGTTTCAGAAGCTGGATACAGTGCTCTGGATCAACCAGTTAGTCTACTTGAAGCGTCACCTTTGCTGAATTTGAAAAATGTTCTTGAGTGTGGTTCAAGGAAAAAAAATGGTGACCAGTCCGTGTCTTTATTTTTTTCTGAAAAAGTTGGTAAACAGAGACATGGGTTTGAATATGCAGCTTTAGAAGTTAAGAATTATTTGGAAAGATTGCTGTTCTCAAAAATTGTTTCTACTGTGATGATAATATTCACCCCACCTGATAGCAGCAGCCTAGAGAAATACAGTCCTTGGGTCTGCCACTTTCATTTAGACAAGGAAATTCTAATGAGAAGAAAGTTGAAAGTGCATTCTATCATTGACTATCTTTACCAGAGATATTACTCCCAGAGTACAGAGCCAAAAGTCGGTTTTACCAAATTGAAAATATCAAGCAAAAAGTGTTCTGTTGATTCCACGGCTAAGGAAGGTGAAGACATTTGTATAGACAAAGAAGACAGTGACGATTGCATTACGGTCACAATCGTTGAAAATTCTGAGAATCCTATACAACTGAATTCTGTTCGGGACTTGATGATACCTTTTTTTCTAGGAACAACAATAAAAGGATTTATGGACATCAAGAAGGTTGATATTCTCTGGAATAATCAATCAAAAGGAACAAATTCCTATAATGGTTCTTCTGGTGAACTGTACTTGAGGGTTACTGTGGCCAGCTCGGGCAACACTGGAAGATTCTGGGGTGTACTTGTAAATCATTGTCACAAGATAATGCAGATAATTGACTGGCCACGGAGTCATCCAGACAACATAAATTATCTCTCATCAGCCTATGGAATTGATGTAGCGTGGCAATATTATTACAAGAGTTTGGCATCAGCAATATCTGATACTGGAAAGTCCATCCTTCCTAAGCATCTGCGTCTTCTTGCCAATAGTATGTCAGCTAGTGGAGAGTTTGTGGGATTAAATGCTAAAGGCATGGCTCAGCAACGACAACATGCGTCCGTTTCATCACCATTTGTGCAAGCATGCTTTTCTAATCCTGGTAGGAGCTTTATAAAAGCTGCCAAGTCTGAACTCACGGATAATCTCCAGGGCAGCCTGGATGCATTGGCTTGGGGAAACTGTCCCTCTATGGGGACAAGTGGACTGTTTGATATCATATATTCAGAGAAGGGACATGAGGTAGACAAGGCTGTAGATGTATATAAGCTGCTAGAAGCCAGTTTTGACAAGCCCAACAATAAGATTGGTTTCCATGCTCACAACAATTCATCTGGCAAATGTGGTTCCGAGTTTAGGCATAAAAATGGTTATGCCTTTAAAGAGGGAAAACAGTGGAAGAACATTCTAAGAAATTTTGTGACGGTAAATGATATTCAGAAGCTGACTACTGCTTCAAGGTGCATATTGAACAAGTATGAAATTGATGAGTTGCTAAGTGAGTTTGACAGATCAACAATTCTAAGAGTTTTGAATTTTCATCCTCGTAGAAGTGAGAAGTTAGGTATTGGACCACAGGACATTAAGGTTGGATGGCATCCTAAATTTAAGGATAGCCGCTGCTTCCATATAGTACGAACTGATGGAACTGTTGAAGATTTTTCATACCGCAAATGCATTCTTCGTGCTCTTGAGGTAGTTGATCCAAAAATGTCAAAGATCCAGAAGAAAAAATGGTCAGCACGTGATGACGCACAAGTCCAGTGCGTGACCAAGGATATTGAGTGA 4392 0.3878 MDDEFFYGNKAPSGVIRAIKFDVLTENDIEKVSVLEINAAGQVTGSTLGLPNTSDECATCGSKNKKICEGHFGVIKFPFPILHPYFMSEIAQILNKICPVCKSIRHKSKGAQLIFGIKRSINCKYCSGNGVGRYPAMKFKFSSNDLYRRTAIIVEVNDKASKKSLGRSLPADYWDFLPYDAQQEENYVNRRVLSPGQVTSLLNDVDPNFIEKYVPRNNLITLNCFPVTPNCHRVTEVPYAISNGNRLSFDDRTRSCKKLVDFRGTANELSSRLNPDKTPISIFADIQKKKVAENACNSSGLRWIKDVILGKRNDSTFRTVVVGDPSLELSEIGIPCHIAESLQVSEYVNRQNLEKLLYCCELRLLEKGQINVCRKGSSIHLFKKEDLQIGDQFYRPLCDGDKVLINRPPSIHQHSMIALTVRVLPISSVVCINPLCCSPLRGDFDGDCLHGYIPQSVSARVELSELVALDKQLFNGQSGRNLLSLSEDSLTAAYLLMEDGVLLDVYQMQQLQMLCNKGLAPPAIVKSPSSNSSFWSGKQLFSMLLPSDFDYSFPSDGVVVSDGELVSSFEASGWLRDSDCNVFQGLVEHFQGKSLNFLFAAQNVLCEWLSMTGFSVSLSDLYLSSDSYARKNMIEEICYGLQDAEKACNFKQLLLDCYCDFLSGNHEESENSMTVDADSLNYERQISAALSQASVDAFRHVFRNIQSLADKYACTDNTFLAMNKAGSKSSLVRLAQHSMCLGMQNSLVRLSYRLPRHLSCAAWNSQKGLDSIQIYSGTLESVQSYIPCAVVKSSFLTGLNPLECFVHSVTIRASGFSENADVPGTLTRRLMFFMRDLFAAYDGTVRNLYGNQLIQFSYDIDENTSCDKSFKEYAIGGEPVGALSASAVSEAGYSALDQPVSLLEASPLLNLKNVLECGSRKKNGDQSVSLFFSEKVGKQRHGFEYAALEVKNYLERLLFSKIVSTVMIIFTPPDSSSLEKYSPWVCHFHLDKEILMRRKLKVHSIIDYLYQRYYSQSTEPKVGFTKLKISSKKCSVDSTAKEGEDICIDKEDSDDCITVTIVENSENPIQLNSVRDLMIPFFLGTTIKGFMDIKKVDILWNNQSKGTNSYNGSSGELYLRVTVASSGNTGRFWGVLVNHCHKIMQIIDWPRSHPDNINYLSSAYGIDVAWQYYYKSLASAISDTGKSILPKHLRLLANSMSASGEFVGLNAKGMAQQRQHASVSSPFVQACFSNPGRSFIKAAKSELTDNLQGSLDALAWGNCPSMGTSGLFDIIYSEKGHEVDKAVDVYKLLEASFDKPNNKIGFHAHNNSSGKCGSEFRHKNGYAFKEGKQWKNILRNFVTVNDIQKLTTASRCILNKYEIDELLSEFDRSTILRVLNFHPRRSEKLGIGPQDIKVGWHPKFKDSRCFHIVRTDGTVEDFSYRKCILRALEVVDPKMSKIQKKKWSARDDAQVQCVTKDIE* 1464
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu2g1583 1463 Gene3D RNA polymerase II, clamp domain 8 123 IPR044893 -
Pvu2g1583 1463 PANTHER DNA-DIRECTED RNA POLYMERASE 9 1348 IPR045867 GO:0003899|GO:0006351
Pvu2g1583 1463 Pfam Protein of unknown function (DUF3223) 1357 1428 - -
Pvu2g1583 1463 Gene3D - 305 476 - -
Pvu2g1583 1463 Gene3D - 1339 1431 - -
Pvu2g1583 1463 PANTHER DNA-DIRECTED RNA POLYMERASE IV SUBUNIT 1 9 1348 - -
Pvu2g1583 1463 Pfam RNA polymerase Rpb1, domain 2 310 467 IPR000722 GO:0003677|GO:0003899|GO:0006351
Pvu2g1583 1463 SUPERFAMILY beta and beta-prime subunits of DNA dependent RNA-polymerase 11 1277 - -
Pvu2g1583 1463 SMART rpolaneu7 218 497 IPR006592 GO:0003677|GO:0003899|GO:0006351
Pvu2g1583 1463 Gene3D - 619 799 IPR038120 -
Pvu2g1583 1463 Pfam RNA polymerase Rpb1, domain 4 699 749 IPR007083 GO:0003677|GO:0003899|GO:0006351
Pvu2g1583 1463 CDD RNAP_IV_RPD1_N 24 846 IPR040403 -
Pvu2g1583 1463 Pfam RNA polymerase Rpb1, domain 3 474 621 IPR007066 GO:0003677|GO:0003899|GO:0006351
Pvu2g1583 1463 Gene3D RNA polymerase ii 343 395 - -
Pvu2g1583 1463 Gene3D RNA polymerase Rpb1, domain 3 477 618 IPR042102 -
Pvu2g1583 1463 Pfam RNA polymerase Rpb1, domain 1 16 256 IPR007080 GO:0003677|GO:0003899|GO:0006351
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu2g1583 Pvu-Chr2 29481557 29492370 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu2g1583 K16250 - gmx:100796185 2427.9
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu2g1583 2 29481557 29492370 Pvu2g1583 2 29481557 29492370 ECH