Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu2g1560 ATGGCTTGTGCGCACTACCATCTTTGCCCCGCGAGTTTGATATTCCGGTCCGACACTGGAGTTCGTCTGGGTCAGACTTTCACGCTAAAGAGTCCTCAACGTTTGTGGCTTGGAACTAAGCTTAGGGTTTCACCATGCAGTCTCAATCTCAGAAATCACGTGTCTGTTTCCCGGCACCGGCCGCTCCCCGCCACCGTCTCCTTCAGCCTCCCCACCGCAAAGGCAGAGCGTGCTTCTCCTGGCCAAGAATTTCCTAAATGGTCTTCCAAGGCTATAAAATCGTTTGCAATGTCTGAATTGGAGGCGAGAAAACTTAAGTATCCTACTACCGGCACTGAAGCCCTTCTCATGGGGGTTCTCATCGAGGGTACTAATTTAGCTGCCAAGTTTTTGCGAGCCAATGGAATTACACTTCTCAAGGTTCAAGATGAAACAATGAAGTTACTTGGAAAAGGTGATTTGTTTTTCTTCAGCCCGGAGCATCCTCCACTGACTGATGAAGCTCAGAGAGCTCTTGATTGGGCTGTTGATCGAAAAACAAAATCTGATGATGGCGGGGAAATGACCACAGCGCACGTACTTCTTGGTATCTGGTCCGAAGTGGATTCTCCTGGATACAAGATTCTCTCCACCCTTGGCTTTAATGATGAAAAAGCTGAAGAGCTTGAGTCCTTAATTTCTAACCCTGGATGTACGGATGATTGA 705 0.4794 MACAHYHLCPASLIFRSDTGVRLGQTFTLKSPQRLWLGTKLRVSPCSLNLRNHVSVSRHRPLPATVSFSLPTAKAERASPGQEFPKWSSKAIKSFAMSELEARKLKYPTTGTEALLMGVLIEGTNLAAKFLRANGITLLKVQDETMKLLGKGDLFFFSPEHPPLTDEAQRALDWAVDRKTKSDDGGEMTTAHVLLGIWSEVDSPGYKILSTLGFNDEKAEELESLISNPGCTDD* 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu2g1560 234 Gene3D - 86 234 IPR036628 -
Pvu2g1560 234 PANTHER ATP-DEPENDENT CLP PROTEASE ATP-BINDING SUBUNIT CLPT2, CHLOROPLASTIC 20 234 - -
Pvu2g1560 234 Pfam Clp amino terminal domain, pathogenicity island component 100 150 IPR004176 -
Pvu2g1560 234 Pfam Clp amino terminal domain, pathogenicity island component 187 226 IPR004176 -
Pvu2g1560 234 ProSiteProfiles Clp repeat (R) domain profile. 84 229 IPR004176 -
Pvu2g1560 234 PANTHER ATP-DEPENDENT CLP PROTEASE ATP-BINDING SUBUNIT CLPT1, CHLOROPLASTIC 20 234 IPR044217 -
Pvu2g1560 234 SUPERFAMILY Double Clp-N motif 86 219 IPR036628 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu2g1560 Pvu-Chr2 29209436 29215678 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu2g1560 - - gmx:100527844 367.466
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu2g1560 2 29209436 29215678 Pvu2g1560 2 29209436 29215678 ECH