Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu2g1428 ATGTCGGTAATATGCGTTCATGGGTGTGGTTTGCTCCGCCGCCAACGCCAAGGCTTGTTCAGTTTATTTTCTTCCTCTGCTTCTTCTGCACTGCTGACGGAAGACCACATGTTTGATGAAAGTCCAAAATCTTATGCTAGTTTTGTGATTGATAGGTCTGTGCCCCATGTTCCCGTAACAAGGAGGGAGTATTTTCCTTTAGTGTCTAGGGTGCTCAAATCACTGAGTTGGAGGGTGGCTAGGGAAGTAAGGTTTGGGAGTTGGGTTGAAAGTCATGGATTTTCTCATTCAATCAATTGCTTTAGAATTATCGTTCATGCGTTTGCTTTGGCGGGGATGCGTTTGGAAGTGTTTGCTTTGCTTAGAGATGTTGTTGGGTTCTGTAATGAGGCCAACTATGACACCTTTGAATTGTTTTCAGTTTTGCTGGATTCACCCCACCATGTTGAAAGATCCGGCGTAGTATTTGATGTGCTTATAAAAGTGTTTGCGTCCAACTCTATGTTGGAAAATTCTCTAAATGTGTTTGTGAATGCTAAGCATGTTGGACTTGAGCCTAGTATAAGGACCTGCAATTTCTTGTTGAAATGTTTGGTTAAAGCGAATAGAGCGGAGTGTGTTAGATGGTTTTTTGAGGAATTGAAGGACCGTGGTCCATCGCCAAATATCCACACCTATACAATCATGATGAACTTTTATTGTAGTTATGTTGTGTGTGATTCAGATATGAGACGGGCTGCTGTGTTTCTAGGGAAAATATTTCAGATTGGGGAAAAACCCACTTTTGTTACATATAGTACTTATATTCATGGACTTTGTAAAGTTGGTTGTGTTGAGGCAGCGCTGATGTTAATTCGCAACTTGTACACAAAAAAACAGCTTCTCAATAGTCATTCTTTTAATTCTGTAATTTATGGGTTTTGTAAAAGAGGTGACGTGTGTGAGGCTTTGCAAGTTTTGGTAGAAATGAAGAGGTATGGGATATTGCCAGATGTTTACAGCTACAGCATATTAATTGATACATTCTGCAAGAAAGGGGACCTAATAAAATCTTTTGACTTGTTGGAGGAAATGCAACGCTCCCAGCTAAAACCATCCATTGTTAGCTACACCTCCCTCATCCATGGTCTGTGCAAGAAAAATCTGATACAGCATGCAGTGGAAATATTCCGCAGTATGGGTGCTTCTAGTGTCAAATATGATCAGATTGTTTATGAAACTTTAATTGATGGATTTTGCACGCAAGGTGATGTTGATTCAGCCATCAAGCTTTTAAAGGAGATGACCAGCTATAATTTGGTTCCTACTGCTTTTAGTTACGGCAGTCTAATTAAGGGATACTACAAACTAGGACTCTTCGATCCGGCATTGGATGTTTTTGAAACCATGGTACGATATGGTATTTGGCCAGATACTAGCGCTTGCAATTATATTCTTGGTGTATCTTGTAGGGCAGGTTACCTCAACGCAGCCTTGACGATGTTGGAGAACTTCGAAGAACATGGATTTAACCTCAACCCACATTCATATAATGCAATCATCAATGAACTTTGTAAAGAAGGCTATCCAGAAAGAGCATTGGAGCTCCTGCCAAGAATGCTTAAAAGGAATGTACCTCCGGTAGCTGTTAATTATATAAATCTTATAACTGGCTTTACCAAACAGTCAAATATAAAAAGGGCTTTGAAGTTATTCAAGAGAATGACAGAACTGGGGAAGACTTTCAACACTGTCACATATACAATTCTTATGAGTATATTTAGTCATTGTAGCAGAATGCATGAAGCATATGGCATTTTTAAGGAAATGAAAGAGAGGGGTTTGCGTCCAGATCAGATTTCATATACAACTTTAATGGCTGGCTTTGGTAATATTGGAGAATGGAAAAAGGCCTGGGCATTATTTGGAGAAATGTCGAGGGAAGGCATTTTTCCAAATGAATTTACTTATACTTGCATGATTGATGGATTTTGTAAGTCAAACCGAATAGATTTGGCCACCTGGCTGTTTGATAAAATGAACAGAGATTCAGTTATTCCTGATGTTGCAACTTACACTGTCCTCATTGCTTGGTACCATAAACATGGATACATCGATGAAGCACATAAGCTATATGATATAATGAAGGAAAAGGGTGTTTTGCCAGATGTATTTACTTATACTTGCATGATTGATGGATTTTGCAAGTCAAACCGAATAGATTTGGCAACCAGGCTGTTCGATGAAATGAACAGAGATTCAGTTATTCCCAATGTTGCAACTTACACTGTCCTCATTGCTTGGTACCATAGACATGGGTACACAGATCAAGCACATAAGCTATATGATATAATGAAGGAAAATGGTGTTTTGCCAGATGATATAACTCGTAAGGTTCTAGGTATGAATGTGCAGTTCACGAAGTCTAGGAAGCTGTATCAGGGCTCCCATGATATCAAGCTGGATAAGAAGATTAAATATTTATTTCTGGCACTGAGATCCAAACGAGACATGTAG 2496 0.3918 MSVICVHGCGLLRRQRQGLFSLFSSSASSALLTEDHMFDESPKSYASFVIDRSVPHVPVTRREYFPLVSRVLKSLSWRVAREVRFGSWVESHGFSHSINCFRIIVHAFALAGMRLEVFALLRDVVGFCNEANYDTFELFSVLLDSPHHVERSGVVFDVLIKVFASNSMLENSLNVFVNAKHVGLEPSIRTCNFLLKCLVKANRAECVRWFFEELKDRGPSPNIHTYTIMMNFYCSYVVCDSDMRRAAVFLGKIFQIGEKPTFVTYSTYIHGLCKVGCVEAALMLIRNLYTKKQLLNSHSFNSVIYGFCKRGDVCEALQVLVEMKRYGILPDVYSYSILIDTFCKKGDLIKSFDLLEEMQRSQLKPSIVSYTSLIHGLCKKNLIQHAVEIFRSMGASSVKYDQIVYETLIDGFCTQGDVDSAIKLLKEMTSYNLVPTAFSYGSLIKGYYKLGLFDPALDVFETMVRYGIWPDTSACNYILGVSCRAGYLNAALTMLENFEEHGFNLNPHSYNAIINELCKEGYPERALELLPRMLKRNVPPVAVNYINLITGFTKQSNIKRALKLFKRMTELGKTFNTVTYTILMSIFSHCSRMHEAYGIFKEMKERGLRPDQISYTTLMAGFGNIGEWKKAWALFGEMSREGIFPNEFTYTCMIDGFCKSNRIDLATWLFDKMNRDSVIPDVATYTVLIAWYHKHGYIDEAHKLYDIMKEKGVLPDVFTYTCMIDGFCKSNRIDLATRLFDEMNRDSVIPNVATYTVLIAWYHRHGYTDQAHKLYDIMKENGVLPDDITRKVLGMNVQFTKSRKLYQGSHDIKLDKKIKYLFLALRSKRDM* 832
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu2g1428 831 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 751 785 IPR002885 -
Pvu2g1428 831 PANTHER (PPR) REPEAT PROTEIN, PUTATIVE-RELATED 694 799 - -
Pvu2g1428 831 PANTHER (PPR) REPEAT PROTEIN, PUTATIVE-RELATED 4 702 - -
Pvu2g1428 831 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 694 799 - -
Pvu2g1428 831 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 4 702 - -
Pvu2g1428 831 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 646 680 IPR002885 -
Pvu2g1428 831 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 331 365 IPR002885 -
Pvu2g1428 831 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 611 645 IPR002885 -
Pvu2g1428 831 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 296 330 IPR002885 -
Pvu2g1428 831 Pfam PPR repeat family 296 344 IPR002885 -
Pvu2g1428 831 Pfam PPR repeat family 750 790 IPR002885 -
Pvu2g1428 831 Pfam PPR repeat family 680 729 IPR002885 -
Pvu2g1428 831 Pfam PPR repeat family 186 235 IPR002885 -
Pvu2g1428 831 Pfam PPR repeat family 401 449 IPR002885 -
Pvu2g1428 831 Pfam PPR repeat family 610 659 IPR002885 -
Pvu2g1428 831 Pfam PPR repeat 363 393 IPR002885 -
Pvu2g1428 831 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 436 470 IPR002885 -
Pvu2g1428 831 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 366 400 IPR002885 -
Pvu2g1428 831 Gene3D Tetratricopeptide repeat domain 710 806 IPR011990 GO:0005515
Pvu2g1428 831 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 506 540 IPR002885 -
Pvu2g1428 831 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 681 715 IPR002885 -
Pvu2g1428 831 Gene3D Tetratricopeptide repeat domain 76 239 IPR011990 GO:0005515
Pvu2g1428 831 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 576 610 IPR002885 -
Pvu2g1428 831 TIGRFAM PPR: pentatricopeptide repeat domain 578 611 IPR002885 -
Pvu2g1428 831 TIGRFAM PPR: pentatricopeptide repeat domain 718 752 IPR002885 -
Pvu2g1428 831 TIGRFAM PPR: pentatricopeptide repeat domain 438 471 IPR002885 -
Pvu2g1428 831 TIGRFAM PPR: pentatricopeptide repeat domain 263 287 IPR002885 -
Pvu2g1428 831 TIGRFAM PPR: pentatricopeptide repeat domain 684 717 IPR002885 -
Pvu2g1428 831 TIGRFAM PPR: pentatricopeptide repeat domain 754 786 IPR002885 -
Pvu2g1428 831 TIGRFAM PPR: pentatricopeptide repeat domain 404 436 IPR002885 -
Pvu2g1428 831 TIGRFAM PPR: pentatricopeptide repeat domain 368 401 IPR002885 -
Pvu2g1428 831 TIGRFAM PPR: pentatricopeptide repeat domain 648 682 IPR002885 -
Pvu2g1428 831 TIGRFAM PPR: pentatricopeptide repeat domain 333 366 IPR002885 -
Pvu2g1428 831 TIGRFAM PPR: pentatricopeptide repeat domain 613 647 IPR002885 -
Pvu2g1428 831 TIGRFAM PPR: pentatricopeptide repeat domain 299 332 IPR002885 -
Pvu2g1428 831 TIGRFAM PPR: pentatricopeptide repeat domain 508 540 IPR002885 -
Pvu2g1428 831 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 716 750 IPR002885 -
Pvu2g1428 831 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 401 435 IPR002885 -
Pvu2g1428 831 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 187 221 IPR002885 -
Pvu2g1428 831 Gene3D Tetratricopeptide repeat domain 572 638 IPR011990 GO:0005515
Pvu2g1428 831 Gene3D Tetratricopeptide repeat domain 639 709 IPR011990 GO:0005515
Pvu2g1428 831 Gene3D Tetratricopeptide repeat domain 499 571 IPR011990 GO:0005515
Pvu2g1428 831 Gene3D Tetratricopeptide repeat domain 432 498 IPR011990 GO:0005515
Pvu2g1428 831 Gene3D Tetratricopeptide repeat domain 360 431 IPR011990 GO:0005515
Pvu2g1428 831 Pfam PPR repeat 263 286 IPR002885 -
Pvu2g1428 831 Pfam PPR repeat 545 572 IPR002885 -
Pvu2g1428 831 Pfam PPR repeat 578 608 IPR002885 -
Pvu2g1428 831 Pfam PPR repeat 509 538 IPR002885 -
Pvu2g1428 831 Gene3D Tetratricopeptide repeat domain 240 359 IPR011990 GO:0005515
Pvu2g1428 831 SUPERFAMILY HCP-like 414 635 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu2g1428 315 782 Glycosyltransferase AT1G05670 27.484 2.36e-55 202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu2g1428 - - vra:106776742 1151.35
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu2g1428 2 27132279 27138483 Pvu2g1428 2 27132279 27138483 ECH