Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu2g1423 ATGTCGATAAAAACTGTCAAAGTCGTTAATGTTTCCTTGGGAGCAACTGAACAAGACATTGAGGAGTTCTTTTCATTTTCTGGTGGCATTGAATATGTTGAACTACAGAGCCATGATGAACGATCTCAAAATGCTTATATTACCTTCAAGGAACCACAGGGAGCTGAGACTGCCGTACTTCTTTCGGGAGCAACCATAGTGGATATGTCAGTTACAATAACTCTGGATCCGGATTACCAGCTTCCACCGGCTGCCTTTACATCATCTGAAAAGGACAATCAAACTCCTGGTGGTGCCGAATCTGCTTTCCGGAAGGCAGAGGATGTGGTCTCTGGCATGCTAGCCAAGGGCTTTATCTTAGGGAAAGATGCTGTCAGCCAAGCAAAAGCGTTTGACGACAAGCACCAGTTATCGTCCACAGCCTCAGCAAAAGTTTCATCTTTTGATCAGAAAATTGGACTCACTGAGAAAATAAGTGCTGGTGCTACAGTTGTTGGTGATAGAGTTCGAGAAGTGGATCAAAAATTTCAGGTTTCTGAAAAGACCAAATCAGCATTTGCAGCTGCAGAAAAGACAGTCAGCAATGCTGGTTCTTCCATAATGAAGAATCGGTATGTGCTTACTGGGACATCCTGGGTCACAGGTGCTTTTAGTAAGGTTTCTAAGGCCGCTGGGGAAGTAGGACAGAAGACTAGAGAGAAAGTGGCGAGTGAAGAACAGCAACAGAAACAAAATGTGGAAGATCAGCACGCACAGGTCCTTTCTGAGTCCTCCAGGCAAGCAGAAGCAAGTGAGCAGAAGAGTTCTAAGCCTGCTCCTGCTCAGGGTTTGATCCTTTGA 840 0.4512 MSIKTVKVVNVSLGATEQDIEEFFSFSGGIEYVELQSHDERSQNAYITFKEPQGAETAVLLSGATIVDMSVTITLDPDYQLPPAAFTSSEKDNQTPGGAESAFRKAEDVVSGMLAKGFILGKDAVSQAKAFDDKHQLSSTASAKVSSFDQKIGLTEKISAGATVVGDRVREVDQKFQVSEKTKSAFAAAEKTVSNAGSSIMKNRYVLTGTSWVTGAFSKVSKAAGEVGQKTREKVASEEQQQKQNVEDQHAQVLSESSRQAEASEQKSSKPAPAQGLIL* 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu2g1423 279 Coils Coil 236 256 - -
Pvu2g1423 279 SMART rrm1_1 5 74 IPR000504 GO:0003723
Pvu2g1423 279 PANTHER BINDING PARTNER OF ACD11 1 1 264 - -
Pvu2g1423 279 SUPERFAMILY RNA-binding domain, RBD 4 82 IPR035979 GO:0003676
Pvu2g1423 279 MobiDBLite consensus disorder prediction 246 271 - -
Pvu2g1423 279 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 8 66 IPR000504 GO:0003723
Pvu2g1423 279 MobiDBLite consensus disorder prediction 230 245 - -
Pvu2g1423 279 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 4 78 IPR000504 GO:0003723
Pvu2g1423 279 MobiDBLite consensus disorder prediction 230 279 - -
Pvu2g1423 279 Gene3D - 2 74 IPR012677 -
Pvu2g1423 279 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR 1 264 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu2g1423 Pvu-Chr2 27097911 27101200 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu2g1423 - - gmx:100797009 452.595
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu2g1423 2 27097911 27101200 Pvu2g1423 2 27097911 27101200 ECH