Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu2g1380 ATGGCTGCTCTGCAATACCTGGAATCGCTGCGCAACGCGCATCCTGAACTCGCCGAATGGTACAATTCGCTCGCGGATCTGTACCAGAAGAAGCTCTGGCATCAACTCACCCTCAAGCTCGAGCAGTTTGTTGCACTCGCTGTTTTTCAGGCTGGTGATGCGTTGATTCAATTATATCACAATTTCATCACAGACTTCGAGACTAAAATCAACCTTCTGAAGCTTGCGCATTTTGCTGTTATAGTTTCTCGGCAGTATTCTGAAAAGGAAGCTGCTGTTGCTTATCTTGGAGGAGTCATTGAGAAGTTGGAGGCCACTAGAGAGCAGCGCATAGAAGAACCTATCCTCTACATTAAGATGCAAATAGCAATATTCAAGCTTGAGCAAGGTGACCAGAAGGAAAGCAAGAAACTCCTAGAAGATGGGAAGACTACACTTGACAGCATGACAGATATTGATCCATCTGTATATGCTAACTATTTCTGGGTATCGTCTCAATTTCACAAGACGCGCCAAGAATTTGCAGAGTTCTACAAAAGTGCCCTTCTCTATCTGGCATACACATCGGTGGAGTCTCTATCAGAATCATTCAAGCTGGATTTAGCATTTGATTTGTCCCTCTCTGCCCTTCTTGGGGACAACATCTACAACTTTGGAGAGCTACTTGCCCATCCTATAATCAAGAGCCTTCTAGGGACAAAAGTGGAATGGCTTTACTATATTCTGCAGGCGTTCAATTCTGGTGATTTAGAACGATATCAAGAATTGTGTCGGGTGCATAATGCTGCTTTAAGAGCCCAACCAGCACTGGTTCAAAATGAAAAGAAGTTGTTGGAAAAGATCAACATTCTCTGTCTGATGGAGATTATATTCAGTCGGCCTTCAGAAGACCGAACTATTCCCTTGAGTGTAATTGCTGAGCGGACAAAACTTTCTATAGAGAATGTGGAACATCTCCTAATGAAGAGCTTATCTGTTCATCTAATTGAGGGTATAATTGATGAAGTTGAGGGCACAGTGCATGTTTCCTGGGTGCAACCAAGAGTTCTGGGTATTCAACAGATCAAATCCTTACGGGATCGACTTGACAGTTGGACAGGGAAAGTACACACTGCATTGTTGTCCATCGAGGCTGAAACACCTGATCTAATCGGATCGTGA 1161 0.4367 MAALQYLESLRNAHPELAEWYNSLADLYQKKLWHQLTLKLEQFVALAVFQAGDALIQLYHNFITDFETKINLLKLAHFAVIVSRQYSEKEAAVAYLGGVIEKLEATREQRIEEPILYIKMQIAIFKLEQGDQKESKKLLEDGKTTLDSMTDIDPSVYANYFWVSSQFHKTRQEFAEFYKSALLYLAYTSVESLSESFKLDLAFDLSLSALLGDNIYNFGELLAHPIIKSLLGTKVEWLYYILQAFNSGDLERYQELCRVHNAALRAQPALVQNEKKLLEKINILCLMEIIFSRPSEDRTIPLSVIAERTKLSIENVEHLLMKSLSVHLIEGIIDEVEGTVHVSWVQPRVLGIQQIKSLRDRLDSWTGKVHTALLSIEAETPDLIGS* 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu2g1380 386 ProSiteProfiles PCI domain profile. 174 347 IPR000717 -
Pvu2g1380 386 PANTHER 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 13 HOMOLOG B 1 384 - -
Pvu2g1380 386 SUPERFAMILY "Winged helix" DNA-binding domain 275 348 IPR036390 -
Pvu2g1380 386 Pfam PCI domain 238 343 IPR000717 -
Pvu2g1380 386 SMART PINT_4 272 365 IPR000717 -
Pvu2g1380 386 PANTHER 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 13 1 384 IPR035298 -
Pvu2g1380 386 SMART motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 272 365 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu2g1380 Pvu-Chr2 26476938 26482507 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu2g1380 K03039 - gmx:100804455 721.85
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu2g1380 2 26476938 26482507 Pvu2g1380 2 26476938 26482507 ECH