Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu2g1253 ATGGGACTAACTAGGGTTTTCGGTGCGACCGCCGGCAGGGCCTTCATGGCGGCGGCGGCGAAGAGCGCGGCCAAGGTAAAAGCTCCTCCATCCGACGGAGCTGGCACAAAATCCGCGGTGAAGAAAACGACTATGGTCAGAGCCAACACCGGCATTCAGAAGGCGGTTCCGGTCTCTTCCGAGCTGGGAAACTTCGTCGGCGCTTCTGAAGTGTCGCGAACTGTCGCGGTTAAGAAAGTGTGGGAGTACATCAAGCAGCAGAATCTTCAGAATCCTTCAAATAAGAAGGAGGTCTTTTGTGATGCAAAGCTGAAGACCATTTTTGGTGGGAAGGATAAGGTTGGGTTCACAGAGATTGCTTCATTGCTGTCTAATCATTTTGTGAAATCAGGCTGA 396 0.5202 MGLTRVFGATAGRAFMAAAAKSAAKVKAPPSDGAGTKSAVKKTTMVRANTGIQKAVPVSSELGNFVGASEVSRTVAVKKVWEYIKQQNLQNPSNKKEVFCDAKLKTIFGGKDKVGFTEIASLLSNHFVKSG* 132
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu2g1253 131 CDD SWIB-MDM2_like 56 127 - -
Pvu2g1253 131 Gene3D SWIB/MDM2 domain 46 131 IPR036885 -
Pvu2g1253 131 SUPERFAMILY SWIB/MDM2 domain 44 129 IPR036885 -
Pvu2g1253 131 ProSiteProfiles SWIB/MDM2 domain profile. 51 129 IPR003121 -
Pvu2g1253 131 PANTHER EXPRESSED PROTEIN-RELATED 11 129 - -
Pvu2g1253 131 Pfam SWIB/MDM2 domain 55 127 IPR003121 -
Pvu2g1253 131 PANTHER SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY D 11 129 - -
Pvu2g1253 131 SMART swib_2 52 131 IPR019835 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu2g1253 Pvu-Chr2 24591833 24593819 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SWI/SNF-BAF60b Pvu2g1253 SWIB 5.3e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu2g1253 - - gmx:100779127 171.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu2g1253 2 24591833 24593819 Pvu2g1253 2 24591833 24593819 ECH