Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu2g1244 ATGGTACTCATCACTGCACCTGTGCCAACACTACCTTCCCACCACCTATTGTTAGACCAAAACCTTGATCCGAAGAACCACAAACCACGTACTTTGTCTTCTCCCAGCCATCAACTCGAGCTTCTACCACCGCTGCGCTACCCCATTCACACCTTCCCACGTCCCCTTATTCCTCAAACAACTACTTTCACCAAGAAGGAGATAAAGAAAAAGAAGAGAAAAGAGGCTACAACCTTAGACATATTGCACTTGATGGACGCTCTACCTTTTCCTATAACCATTGACATATACACTTCTTTGATAAAAGAGTGCACTGTTTCCGGCGACCCAGAAACTGCCATTGAGTTGTACACTCACATCTCCAAGAGCGACATCAAACCACCCTTGCCTTTCCTCAATCGGATTCTCATTATGTTCGTGTCCTGTGGTATGTTGGAAAATGCACGCCACATGTTTGAAAAAATGCGTGTAAGGGACTTCAACTCTTGGGCGACCTTGTTTGTTGCTTACTATGATAATGCCGAGTATGAGGAGGCCACGGCTGTTTTTGTCAACATGTTAGGTCAATTGGGTATGTTGCAGTTTCCTCCATGGATATGGGCTTGTCTTCTCAGGGCTTGTGCATGCACTTTGAATGTGCCTCTGGGATTGCAAGTTCATGGATGGTTGTTGAAGTTGGGTGCTTGTGATCATGTGCTTCTCAGCAGCTCCTTGATAAACTTTTACGGGAGATTTACGTGCCTGGAAGATGCGAGTGCTGTCTTCAATGGGGTGTCGCGGCACAACACGCTGACTTGGACGGCAAAAATCGTTAGTGGTTGCAGGGAAAGGCATTTCTCTGAGGTTTTTGGCGACTTCAGGGAGATGGGAATGCGAGGGGTGAAGAAGGACTGCTTCACGTTTTCTAGTGTTCTCAAGGCTTGTGGAAAGATGCTGAATCAGGAACGATGTGGTGAACAAGTCCATGCTGATGCCATCAAACTTGGGCTGATCTCGGATCACTATGTGCAGTGTAGTTTGATTGCCATGTATGGAAGATGTGGGTTGTTGACAGATGCAAAAGATGTGTTTGAGATGACCCGAGAGGAGAGAAAGGTTGATTGTTGGAATGCTATGCTTATGGGTTACACACAGAATGGTTTCCACATTGAAGCTGTCAAGTTTCTGTATCAGATGCAGGCAGCTGGAATGCAGCCCTGGGAATCTCTGCTTAAAAAATTAAGAATTGCTTGTGGCAGTATTACCTACTCAAACATGAATTAA 1263 0.4561 MVLITAPVPTLPSHHLLLDQNLDPKNHKPRTLSSPSHQLELLPPLRYPIHTFPRPLIPQTTTFTKKEIKKKKRKEATTLDILHLMDALPFPITIDIYTSLIKECTVSGDPETAIELYTHISKSDIKPPLPFLNRILIMFVSCGMLENARHMFEKMRVRDFNSWATLFVAYYDNAEYEEATAVFVNMLGQLGMLQFPPWIWACLLRACACTLNVPLGLQVHGWLLKLGACDHVLLSSSLINFYGRFTCLEDASAVFNGVSRHNTLTWTAKIVSGCRERHFSEVFGDFREMGMRGVKKDCFTFSSVLKACGKMLNQERCGEQVHADAIKLGLISDHYVQCSLIAMYGRCGLLTDAKDVFEMTREERKVDCWNAMLMGYTQNGFHIEAVKFLYQMQAAGMQPWESLLKKLRIACGSITYSNMN* 421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu2g1244 420 Gene3D Tetratricopeptide repeat domain 321 413 IPR011990 GO:0005515
Pvu2g1244 420 Gene3D Tetratricopeptide repeat domain 195 320 IPR011990 GO:0005515
Pvu2g1244 420 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 365 399 IPR002885 -
Pvu2g1244 420 PANTHER OS07G0578800 PROTEIN-RELATED 65 414 IPR045215 GO:0003723|GO:0009451
Pvu2g1244 420 Gene3D Tetratricopeptide repeat domain 63 194 IPR011990 GO:0005515
Pvu2g1244 420 Pfam PPR repeat 96 119 IPR002885 -
Pvu2g1244 420 Pfam PPR repeat 368 396 IPR002885 -
Pvu2g1244 420 Pfam PPR repeat 339 361 IPR002885 -
Pvu2g1244 420 Pfam PPR repeat 135 159 IPR002885 -
Pvu2g1244 420 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 93 127 IPR002885 -
Pvu2g1244 420 PANTHER PPR REPEAT PROTEIN 65 414 - -
Pvu2g1244 420 TIGRFAM PPR: pentatricopeptide repeat domain 368 400 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu2g1244 Pvu-Chr2 24379460 24380942 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu2g1244 91 415 Glycoside Hydrolase AT3G49170 29.762 1.56e-34 134
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu2g1244 - - gmx:100778405 731.865
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu2g1244 2 24379460 24380942 Pvu2g1244 2 24379460 24380942 ECH