LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pvu2g1208	ATGATGGCCAGCATAAAGCCTTTGCCGGAGACAGTGCGCAGCTCACTTCGTTCTGGCATTTTCCTGTTCGACTTCACGCGCGTCGTGGAGGAACTGGTTTTCAATAGCCTCGATGCTCGTGCCACAAAGGTATCAGTGTTTGTTAGTATTGGGAAATGCTGTTTGAAAGTAGTTGATGATGGAAGTGGAATTACTCGAGATGGACTTGAGTTGGTGGGAGAAAGATATGCAACATCAAAATTTCTTAATTTGGTTGACCTCAATGTTACGAGTGAGAATTTCGGTTTCCGTGGGGAGGCTTTGGCTTCCATTTCTGATGTCTCTGTGCTGGAAATTGTGACAAGAACACATGGAAGGCCAAATGGATATCAAAAAGTTTTGAAGGGGTGCAAGTGTTTATATCTCGGCATTGATGATGATAGAAAGGAAGTGGGTACCACAGTTGTTGTCCGTGATTTATTTTACAATCAACCAGTTCGGAGAAAATGCATACTGTCCAGTCCCAATAAGGTACTGCAATCAATCAAGAAATGTGTAATGCGGCTTGCACTTGTGCGTCCAAATATTTCCTTCAAAGTTGTTGATATTGAAAGGTTTGAACATCTGAAATCATGGAATACTGATAATGAGTTCCGAAACAAGAAGAGAAGCAGGTGTCAGACGGGTCCAGCTTATCTCTTGAATTTAACTTGCCCCCGATCTATGTATGATTTGGCCTTTGAGCCATCAAAAACGTATGTTAAATTCAAGGATTGGACACCTATTCTAAATTTCATTGAGAAGGTCATCAAACAATTCTGGGAGGAAAACATAGCTTCTGTAGAGCCCATCATTCAAGCTGCATACATGGTAGAAGATCAACAAGAGAAAGCATATGTCAACATCATTTCAGACGAATCAGATATATCAAAGTTTAGAAACCAAAATCGTAAGGATTGCCTAGATCTATTCTTTTCTACTTCGGACAAGCTAATTGAAGGTAACTATCATCAATCTAACAGGGAAGATGTTAGAACCTCCATTGGTTACATGGAGGCCGCGATGTTCAAAGAGAAACAAAGTATTGGAGACTCTCTTTTTCAGACTGGTTATTCTGGCAACTTATTGGATGATGATTCACATGCCAAGTGCATATCCACTGTGACAAGAAGGCCAAACGGTTTGCTGATGCGTGATAGCAGCAGTTCATTGAAAGGAGATAACCTTTTTTATGATGAAATACCAGCTATAGAAAGTTTAAATGATTGTGTACCTTTTCATGCACCGAGTTCTTCACATGGAAGAAAATTCCATAAAGAAGCTGATGTGAACAGTGAAACATTTCAAGATGATTTACATTTTAACTGCAATGAGTACAGTTATGATGTAAATATTAATGGGGATTTGCAGAAATCTTTTCTAAAGGGATGCTCTACTCTAGGAAGTATCCTGCACAAGAAAGATTTCTTTGTAAAAAATGATGGATATGAAATCCAAACTGATAGCTTTTGTAGCAAGCGGAATACAGGGGAGGATTGTATAAGTGGTAAGGATTTAAATGATGTACCTTTTGATGAACCAAGTTCTTCACATGGAAGAAAATTCCATAAAGGAGCCGATGTGATCAGTGAATCATTTCAAGATGATTTACACTATAACTACGATGGGTACAGTTATGATGTAGATATTAATGGGGATTTGCAGAAACCTTTTATAAGGGGATGCTCTACACTAGGAAGTATCCTGCCTAAGAAAGATTTATCTGTAAATGATAAATATGAACTCCAAACTGATAGCTTTTGTAGCAAGAAGAATACTGGGGAGGATTATAGAAGTGGTAAGGATTTATATGTCCATCCCTATCCGGAAGTAAAAAAAAAATTAAAGATGTCAAAAAATTCCGATTTTCTTGAAAGAGAATTGGCTGAAGAAAACTGTCTCCCTTCAGATTTATGCTACTCAGCATCAAGAATAGGAAGCTCTGAGTCAGATGATCTGTCATCCAATTTTGAATGCCATCCTCTCTACCCAAAATCCTCATCCCAAGCACATGCACTGGGTTTTTATCGTACAACTGATATTAAAGATGATCTTGGAGGAGAATCTAGATGCTTTAAATGGGTCCATCATAAAAAACGTTTAGATGAAAGAGAAAATGAGTTCAATTTCAGCTACAATATGTCATGGAATACCAACCAGCATCACTCTGCATCAAGTTATGCAAATATTGGATTTAATTTTGATGTTGCTGGTGATTCTGGTGAAATATTCAACAAACGAGTTGACTGCCCTGATTTTAGTGACATATATTCTACAAAAAGGTCAGATATGTTAAACAAGGAGCTAGACTGGCTGTTGCCAAAGTCATGTTTTAAAAGCTGCAAGAGGCCTAACAAGAACAAAGGCAAAACAGATCAATTTAGAAATTCAATTTTGGAAGGAAATCATGAAAGATCTAGAAGAAGCATTTCAGCTCCTCCTTTTTATAGAAGCAAAAGGAGGTTTTTCTCTTTAAATCATCCTTCAGAAATAAAAGCCAAAAGACAGATTGACCGAGTGTATAACCCTGCTTTCAATCATGGAGAAGCTAGTAATTCTAAATATCATCAACAGCCTCCTGTTGCTCATCACCAAAGCACTAAAGATCTCTTATTACAAGAATTCAAAATCAATGTGAAACAAACTTCAGAGGTTCTGGGTGCTATGCAGGTTAATGACATAACAGAGATTGAAGAACTTGAGAGTTTCAACATTCAAAACAGTGCTCCAATTGGGGAATTGTGCTCTAAGGATGTGCAAGATTCCATAGATTTTGGGACTAAGTGGAGGAATTGCTCACCTAATATTACAAATGATAAACCGGCTAATATTGAATGTCGAAACAATATACTTGACATTTCTTCTGGATTCTTGCATCTTGCTGGAGATTCATTGATTCCTGAAACTATCAGTAAGAAATGTCTTGAGGATTCTAAAGTTTTGCATCAGGTGGATAAAAAATTCATTCCAGTTGTGGCTGGCAGAACCCTTGCTGTTATTGATCAGCATGCAGCAGATGAAAGAATCAGACTGGAAGACTTGCGTCAAAAGGTATTGTCAGGAGAAGCAAAAACAGTAACCTATCTACATGCTGAACTGGAACTGGTACTGCCAGAGATTGGTTATCAACTACTTCATAGTTATAGCGAACAGATTAAAGATTGGGGCTGGATCTGCAACATTCATGCTAAAAATTCGGAGTCCTTTAGAAGGAATTTGGATATTATAAAAAGACAACAAACGACAATCACACTTATTGCGCTTGCTGACACTGATGGATCGTCAACAATGCCACCCTCTGTCATACGAGTGTTAAATTCGAAGGCATGCAGAGGTGCAATTATGTTTGGGGATTCATTGCTACCATCAGAATGTTCCCTTCTAGTTGAAGAGCTAAAGCATACATCGCTTTGTTTCCAATGTGCTCATGGGCGACCAACAACTGTTCCTCTAGTTAACTTGGAGGCACTGCATAATCAGATAGCCAAGCTTCGACTGATGAACGAGTCTTCAAGTGACGAATGGCATGGATTACATAAACATAAAGTATGCGTTGAACGTGTAGTACAGCGTTTAAATCCTGCTAGTGGAACTTGA	3615	0.3831	MMASIKPLPETVRSSLRSGIFLFDFTRVVEELVFNSLDARATKVSVFVSIGKCCLKVVDDGSGITRDGLELVGERYATSKFLNLVDLNVTSENFGFRGEALASISDVSVLEIVTRTHGRPNGYQKVLKGCKCLYLGIDDDRKEVGTTVVVRDLFYNQPVRRKCILSSPNKVLQSIKKCVMRLALVRPNISFKVVDIERFEHLKSWNTDNEFRNKKRSRCQTGPAYLLNLTCPRSMYDLAFEPSKTYVKFKDWTPILNFIEKVIKQFWEENIASVEPIIQAAYMVEDQQEKAYVNIISDESDISKFRNQNRKDCLDLFFSTSDKLIEGNYHQSNREDVRTSIGYMEAAMFKEKQSIGDSLFQTGYSGNLLDDDSHAKCISTVTRRPNGLLMRDSSSSLKGDNLFYDEIPAIESLNDCVPFHAPSSSHGRKFHKEADVNSETFQDDLHFNCNEYSYDVNINGDLQKSFLKGCSTLGSILHKKDFFVKNDGYEIQTDSFCSKRNTGEDCISGKDLNDVPFDEPSSSHGRKFHKGADVISESFQDDLHYNYDGYSYDVDINGDLQKPFIRGCSTLGSILPKKDLSVNDKYELQTDSFCSKKNTGEDYRSGKDLYVHPYPEVKKKLKMSKNSDFLERELAEENCLPSDLCYSASRIGSSESDDLSSNFECHPLYPKSSSQAHALGFYRTTDIKDDLGGESRCFKWVHHKKRLDERENEFNFSYNMSWNTNQHHSASSYANIGFNFDVAGDSGEIFNKRVDCPDFSDIYSTKRSDMLNKELDWLLPKSCFKSCKRPNKNKGKTDQFRNSILEGNHERSRRSISAPPFYRSKRRFFSLNHPSEIKAKRQIDRVYNPAFNHGEASNSKYHQQPPVAHHQSTKDLLLQEFKINVKQTSEVLGAMQVNDITEIEELESFNIQNSAPIGELCSKDVQDSIDFGTKWRNCSPNITNDKPANIECRNNILDISSGFLHLAGDSLIPETISKKCLEDSKVLHQVDKKFIPVVAGRTLAVIDQHAADERIRLEDLRQKVLSGEAKTVTYLHAELELVLPEIGYQLLHSYSEQIKDWGWICNIHAKNSESFRRNLDIIKRQQTTITLIALADTDGSSTMPPSVIRVLNSKACRGAIMFGDSLLPSECSLLVEELKHTSLCFQCAHGRPTTVPLVNLEALHNQIAKLRLMNESSSDEWHGLHKHKVCVERVVQRLNPASGT*	1205

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pvu2g1208	1204	SUPERFAMILY	Ribosomal protein S5 domain 2-like	220	268	IPR020568	-
	Pvu2g1208	1204	CDD	HATPase_MutL-MLH-PMS-like	12	198	-	-
	Pvu2g1208	1204	PANTHER	DNA MISMATCH REPAIR PROTEIN MLH3-RELATED	2	1162	IPR028830	GO:0006298
	Pvu2g1208	1204	Pfam	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase	26	121	-	-
	Pvu2g1208	1204	Gene3D	-	3	218	IPR036890	-
	Pvu2g1208	1204	Gene3D	-	1030	1121	IPR042121	-
	Pvu2g1208	1204	SUPERFAMILY	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase	24	197	IPR036890	-
	Pvu2g1208	1204	SUPERFAMILY	DNA mismatch repair protein MutL	985	1157	IPR037198	-
	Pvu2g1208	1204	Gene3D	-	989	1157	IPR042120	-
	Pvu2g1208	1204	PANTHER	DNA MISMATCH REPAIR PROTEIN MLH, PMS, MUTL	2	1162	IPR038973	GO:0006298\|GO:0016887\|GO:0032300\|GO:0140664
	Pvu2g1208	1204	Pfam	MutL C terminal dimerisation domain	985	1126	IPR014790	GO:0005524\|GO:0006298
	Pvu2g1208	1204	SMART	MutL_C_2	986	1126	IPR014790	GO:0005524\|GO:0006298
	Pvu2g1208	1204	Coils	Coil	1160	1180	-	-
	Pvu2g1208	1204	ProSitePatterns	DNA mismatch repair proteins mutL / hexB / PMS1 signature.	95	101	IPR014762	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pvu2g1208	Pvu-Chr2	23712377	23722385	Dispersed

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pvu2g1208	K08739		-	gmx:100788019	1068.14

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Pvu2g1208	2	23712377	23722385	Pvu2g1208	2	23712377	23722385	ECH