Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu2g1202 ATGAGCGAATCCCAAGACCTCTCCTACCCTCCTATAGACCCTGTCAACTTCGATCTCATCATCGTCGGCACCGGCCTATCTGAATCCATCATCGCCGCCGCCGCATCCGCCGCCGGAAAAACTATCCTCCACCTCGACCCCAACTCCTTCTACGGTAGCCACTTCGCCTCTCTCTCCTTCCTCCACCTTACTGCCTACCTCACCTCCCCCAGTCCGCTCCCCGCCGCCGTCACAACCACTGATTCCGAAGACGTCGTTGTCGATCTCCTCCACCAACCCCTCTGCTCCGATGCAGAAATCACATCCTACGATGAATACTCATTCCTCTGCGAAAATTCGAGAAAATTCAACATCGATTTGGGAGGTCCGAGGGCGCTGTTCAGCGCGGACAAGACGATCGATCTGCTGCTGAAATCGGGCGCGGCGCAGTATTTGGAGTTCAAAGGAATCGATGAATGCTTCGTATACGAAGCAAATGAGGGTTTGGCGAACGTGCCAGATTCTCGCGGAGCAATTTTCAGAGACAAGAAGCTTTCGCTGAAGGAGAAGAACCAGTTGATGAGGTTCTTCAAGCTGGTTCAGCAGCACTTGGATGATACTCAGGAGGAGAAAATTTCGAAGGAAGATATGGAGATTCCGTTTGTTAGTTTCTTGGAGAAAATGAAGTTGCCGCCTAAGATAAAATCGATTCTTCTGTATGCTATAGCCATGCTAGATTATGATCAAGACAGTAACGAGGTTTGTAAAGATTTGCTTAAAACAAAAGATGGAATAAATTGTTTAGCTCAATACAGCTCATCTGTTGGAAGGTTTCCTAATGCTCCTGGGGCTTTGCTTTATCCTATTTATGGTGAAGGAGAACTACCACAAGCCTTTTGTCGCCGTGCTGCTGTCAAAGGTTGCATTTATGTTCTAAGAATGCCAGTTGTTTCGCTGCTTATGGATAAGGTTACTGGGCTTTATAAAGGTGTTAGATTAGCTTCAGGTCAAGATTTATATAGCCACCAACTAATTCTGGATCCATCCTTCACGATTCCATCACCGTTGTCTTTGTCTCCAAGAGATTTTCCTTCTGAAAGGCTCCAACTGTTGAGTCAGAGAGATATTAAAGGAATAGTGGCTAGGGGAATATGCATCACAAGAAGTTCAATAAAGCCAGGTGTATCTAACTGCTCAGTGGTGTATCCTCCTAGATCTTTGTATCCCGAACAGATGACGTCAATCAAATCTCTTCAGATAGGATCAAATCTTGCTGTCTGTCCTGAGGGAACCTTTATTTTATATTTTTCCGCAATGTGCAAAAATGCCGATGAAGGAAAGAATCTACTAAAAGCAGCCATGAATGCTCTTCTCACACTGCCTGTATCCGGAAACACTATTTCTAGTGTCCAAAGTGACAGTGAAGATACTAAACCGATTGTGCTCTGGAGTGCATTGTATATTCAGAAACTAATTATGAGTAAATTTGAATTGATCAGCTCCACTTCTACACCGGATGGAAATCTGAACTACAATGACCTTTTAGATGCGGCTGAGAAGCTATTTGGTCAGATGTACCCCAATGAAGAATTCTTTCCAAAGGCGACATCACCCGAAGATCCAACAGATGAGGATGATAATGGGGTGACTCTGGATAGCTAA 1641 0.4503 MSESQDLSYPPIDPVNFDLIIVGTGLSESIIAAAASAAGKTILHLDPNSFYGSHFASLSFLHLTAYLTSPSPLPAAVTTTDSEDVVVDLLHQPLCSDAEITSYDEYSFLCENSRKFNIDLGGPRALFSADKTIDLLLKSGAAQYLEFKGIDECFVYEANEGLANVPDSRGAIFRDKKLSLKEKNQLMRFFKLVQQHLDDTQEEKISKEDMEIPFVSFLEKMKLPPKIKSILLYAIAMLDYDQDSNEVCKDLLKTKDGINCLAQYSSSVGRFPNAPGALLYPIYGEGELPQAFCRRAAVKGCIYVLRMPVVSLLMDKVTGLYKGVRLASGQDLYSHQLILDPSFTIPSPLSLSPRDFPSERLQLLSQRDIKGIVARGICITRSSIKPGVSNCSVVYPPRSLYPEQMTSIKSLQIGSNLAVCPEGTFILYFSAMCKNADEGKNLLKAAMNALLTLPVSGNTISSVQSDSEDTKPIVLWSALYIQKLIMSKFELISSTSTPDGNLNYNDLLDAAEKLFGQMYPNEEFFPKATSPEDPTDEDDNGVTLDS* 547
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu2g1202 546 PANTHER RAB GDP-DISSOCIATION INHIBITOR 13 533 IPR018203 GO:0005092|GO:0007264
Pvu2g1202 546 PRINTS Rab GDI/REP protein family signature 18 36 IPR018203 GO:0005092|GO:0007264
Pvu2g1202 546 PRINTS Rab GDI/REP protein family signature 36 53 IPR018203 GO:0005092|GO:0007264
Pvu2g1202 546 PRINTS Rab GDI/REP protein family signature 132 148 IPR018203 GO:0005092|GO:0007264
Pvu2g1202 546 PRINTS Rab GDI/REP protein family signature 182 197 IPR018203 GO:0005092|GO:0007264
Pvu2g1202 546 PRINTS Rab GDI/REP protein family signature 284 305 IPR018203 GO:0005092|GO:0007264
Pvu2g1202 546 PANTHER RAB PROTEINS GERANYLGERANYLTRANSFERASE COMPONENT A 13 533 - -
Pvu2g1202 546 SUPERFAMILY FAD/NAD(P)-binding domain 15 349 IPR036188 -
Pvu2g1202 546 Gene3D Guanine Nucleotide Dissociation Inhibitor, domain 1 165 277 - -
Pvu2g1202 546 PIRSF Rab_ger_ger_transf_A_euk 1 92 IPR001738 GO:0005968|GO:0006886|GO:0018344
Pvu2g1202 546 PIRSF Rab_ger_ger_transf_A_euk 78 546 IPR001738 GO:0005968|GO:0006886|GO:0018344
Pvu2g1202 546 Gene3D Guanine Nucleotide Dissociation Inhibitor, domain 2 93 484 - -
Pvu2g1202 546 MobiDBLite consensus disorder prediction 523 546 - -
Pvu2g1202 546 SUPERFAMILY FAD-linked reductases, C-terminal domain 370 483 - -
Pvu2g1202 546 Gene3D - 14 524 IPR036188 -
Pvu2g1202 546 Pfam GDP dissociation inhibitor 112 452 IPR018203 GO:0005092|GO:0007264
Pvu2g1202 546 Pfam GDP dissociation inhibitor 16 91 IPR018203 GO:0005092|GO:0007264
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu2g1202 Pvu-Chr2 23621684 23627190 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu2g1202 K23460 - gmx:100795946 927.546
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu2g1202 2 23621684 23627190 Pvu2g1202 2 23621684 23627190 ECH