Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu2g1190 ATGGCGGTTACTTTCAGAATGAACAACAACAAACATGGCGTGCTCGCTCGTTTGAAGACTCTCGTCAACTCTCAGAACTTTCACTCCGCTGATCCCAAACTGGCCAAACAACCAAAGCAAGACAGTCCGTCTCCAAAAGGAGACTTGGACTACTCTATTTGCCGAGATCGCATAGGCATCTCAGAAGGGAAGACTTTGGATGCAAAGGAGTTTGGTGTAACTAGTTCTATGATTTCACACTCATCTATGTTTGTCCTGAAACTTCTTCGGAGCAAAGGATTTGAGTCCTACTTAGTAGGGGGGTGCGTGAGAGATCTAATACTGAATAGAACCCCAAAAGATTTTGATGTCATCACCACAGCAAAGCTTATGGAGGTGAGAAAGCAGCTTCGTCGTTCAGCTCATGCTGAAGTTGTTGGACGTCGTTTTCCAATATGCTTGGTTCATATAAAAGGTTCTGTAGTTGAGGTAACTAGTTTTGAGACAGTGGCACAAACTTCCAATGGGAAGGAACAATTTTTGTACTCTCTGTTGCCCAAATGCAGTAACAAAAAAGACTTGTTTCGCTGCAAAAACTCCTTGCGCAGAGACTTTACAATTAATAGTTTATTTTATGACCCCTTTGCCAATAAAATCTACGATTATACCAATGGAATGGCAGATTTGAAGACCTTAAAGCTAGAAACTGTTATCCCTGCACAGCTGTCCTTCAAAGAGGATCCTGGAAGAATTTTGCGTGGCTTCAGAATTACAGCTCGGCTAGGTTTATCAATATCAAGGGAGATTGAGGCTGCAATCTGGACATATTCTTCACTAGTTAAGACTTTGGACAAGAGTAGAATTATGATTGAATTGAAGTATATGCTGTCTTATGGAGCTGCTGAACCATCTCTGCGTCTACTTTGGAAATTCAAATTGCTTGAGTTTTTACTTCCTGTACATGCAGCATATCTAGATGAACAGGCTATTGAAGAAGATGCTCAGGCTTCCAATATGTTGTTAAAGTTATTCTTCCATCTGGATAAGTTGGTTGCATGTGATCGGCCTTGTGATTGCACTCTGTGGATTGGATTGCTTGCATTTCACCTGGCATTAGTAAATAATCCTCAAGATGCTATAGTGGTGTGGGCTTTTGCATCTGTTCTATATCATGGAGAGTGGAAAGAAGGTGTTAAATTTGCTAAAGAACAGGCCAGGATGAGTGTTAATTTTGTACCTGAAATAAGAAAATCTAATTTATACAAATCAGATGAAGAAATTGCAATAGCAGTTACTAAATTGGCATCTTTGGTGATACACTCGATATCTCCGTTGGTTGAGAAAAATAGTCTTCGTCAGTTCCTGAGCATTTCTAGATACCCATCTTTTCCACAATCTGGCATGGTATTTGTATCCAGGAAAGCAGGGAATCTTGCTCATGCAATTTTCAAAAAGCTGGCCAGTGATGGTAAATTTTACAAGAGTGGGAGAAGAACAGATTTGAAGATAAATTATGACATGCTTGGGAAGGGTCAACTTTCAGAGACTGGATTTGTTTTGGGCAAAATTGTACTTGAAACTATGAGTAGTGGAATTGTTGGGGATGGGAAGGATCCTGAAGCTGGACAATGTCACCTAAAGACTAAGGGCACTGAAGAAATTGGTCCATCGCAACATCCAGATCTGGTAAACCATCAAGTGGCGTCAATGGATGGTGAAGGACAACTTTTATCAATACCAAATTCAGCATGTGGGCAAGAAAAAAACAAGAAACGGAAACTGGTTGAGAATAGGTGTGTTGCAAGGAAGAAAATGGGCTCAGGGAACCATGAATTGTCTGAGAAATTTAAATGCAAGGAAAATAAAAAAGAGCAGCAGAAGCTAGTTAAGATAAACCAGAAGGTTGATCAGTCCATGAAGAAGGACTCCGCAAAAAGGAAAATTGATCACAGAAAACAGCTGATAAATGATAAGAAGAAAATAACCAGTGCCAATACAAGTTCTCTAGACCAAGCTATGCTAATGAAGACGGAACACAGCACATGTACGGCATCACAATCTGCAGTATCTGAAAATCATCGGGTGATAGCTTACAACTTGGACATGGATGCAAAAACAACAAATAACAACTTGGACGTGGATGCAAAAACACCAAATGAGTCAGACATGAAGAAGAAGAAAATGCGTGTATCACTGGTCGAACTCTTTAAGTGA 2193 0.4013 MAVTFRMNNNKHGVLARLKTLVNSQNFHSADPKLAKQPKQDSPSPKGDLDYSICRDRIGISEGKTLDAKEFGVTSSMISHSSMFVLKLLRSKGFESYLVGGCVRDLILNRTPKDFDVITTAKLMEVRKQLRRSAHAEVVGRRFPICLVHIKGSVVEVTSFETVAQTSNGKEQFLYSLLPKCSNKKDLFRCKNSLRRDFTINSLFYDPFANKIYDYTNGMADLKTLKLETVIPAQLSFKEDPGRILRGFRITARLGLSISREIEAAIWTYSSLVKTLDKSRIMIELKYMLSYGAAEPSLRLLWKFKLLEFLLPVHAAYLDEQAIEEDAQASNMLLKLFFHLDKLVACDRPCDCTLWIGLLAFHLALVNNPQDAIVVWAFASVLYHGEWKEGVKFAKEQARMSVNFVPEIRKSNLYKSDEEIAIAVTKLASLVIHSISPLVEKNSLRQFLSISRYPSFPQSGMVFVSRKAGNLAHAIFKKLASDGKFYKSGRRTDLKINYDMLGKGQLSETGFVLGKIVLETMSSGIVGDGKDPEAGQCHLKTKGTEEIGPSQHPDLVNHQVASMDGEGQLLSIPNSACGQEKNKKRKLVENRCVARKKMGSGNHELSEKFKCKENKKEQQKLVKINQKVDQSMKKDSAKRKIDHRKQLINDKKKITSANTSSLDQAMLMKTEHSTCTASQSAVSENHRVIAYNLDMDAKTTNNNLDVDAKTPNESDMKKKKMRVSLVELFK* 731
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu2g1190 730 Coils Coil 614 634 - -
Pvu2g1190 730 SUPERFAMILY Poly A polymerase C-terminal region-like 227 378 - -
Pvu2g1190 730 MobiDBLite consensus disorder prediction 29 48 - -
Pvu2g1190 730 Pfam Poly A polymerase head domain 97 226 IPR002646 GO:0003723|GO:0006396|GO:0016779
Pvu2g1190 730 PANTHER POLYNUCLEOTIDE ADENYLYLTRANSFERASE FAMILY PROTEIN 9 730 - -
Pvu2g1190 730 Gene3D Beta Polymerase, domain 2 63 224 IPR043519 -
Pvu2g1190 730 Gene3D - 227 463 - -
Pvu2g1190 730 PANTHER POLYNUCLEOTIDE ADENYLYLTRANSFERASE FAMILY PROTEIN 9 730 - -
Pvu2g1190 730 Pfam Probable RNA and SrmB- binding site of polymerase A 255 317 IPR032828 -
Pvu2g1190 730 CDD NT_ClassII-CCAase 87 223 IPR002646 GO:0003723|GO:0006396|GO:0016779
Pvu2g1190 730 SUPERFAMILY Nucleotidyltransferase 72 223 IPR043519 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu2g1190 Pvu-Chr2 23431611 23439090 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu2g1190 - - ccaj:109801320 1083.55
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu2g1190 2 23431611 23439090 Pvu2g1190 2 23431611 23439090 ECH