Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu2g0788 ATGGGATTTCTTCAACATCCCTTGTGTCGCCACTCACAACAACAACAACAAAAATCCTATGATCACTACCATTCAGAATCATCAACCTCTTCTTCTCTACATTCACAACCAAGTCTTCCTTCAGTCCCTTCACTAAGTTCCCTCACCCCACAACAACCGCACCACCTCCAACAACAACCTCAAACCACCGTCAAAATCCACTCCTCCCCAATCTCCTCCCTCGTCCTTGACGGAAAACTCCTCTACAGCGCCGCCTCCAGCGGGGAGGTCAAAACATGCAGCAGAGATCCTTTCATACTCCAAACCAACACCACAACCAACACCAACGTTGTTGTCGTCGAAACCACCAACGCGCCCATCAAGTCCCTCATTGTATTCCACGACACGCTCTTCACCGCACATCAAGACCACAAAATCCGAGTCTGGAAAACCGACCAACCCACCAAGTGCATCGCCACGCTTCCCACGCTCCACGACCGTTTCTCCAAGCTATTCTCCTCCAAGAACTACGTCGAGGTGCGCCGCCACAAAAAGCGCACGTGGGTGCATCACGTGGACGCCGTTTCCACCCTCGCGCTCTCTCACGACGGCTCCCTCCTCTACTCCGCTTCCTGGGACAGGACGTTTAAAATATGGCGAACCTCGGACTTCAAATGTTTGGAGTCCGTAAAAAACGCGCACGAGGACGCGATTAACTCCTTGGTTTTGTCGAATGACGGCGCTGTCTACACGGGTTCCGCCGACACAAAGATAAAGATGTGGAAGAAGCGCGAGGGTGAGAAAAAGCATTCCCTTGTGGCAACGTTAGAGAAGCATAAATCCGCAGTTAACGCTCTCGCGCTTAGCGCAGATGGGTCGGTGCTGTACTCTGGCGCGTGTGACAGATCAATTTTAGTGTGGGAAAGGGATGAGAATGATGATAATAATATGGTGGTGGTGGGGGCTTTAAGGGGGCATACGAAGGCGATACTGTGTTTGGTGGTGATGGCGGATTTGGTGTGTAGTGGATCTGCTGATAACAGTGTTAGGGTATGGAGGAAAGAGATTGAGAAGGGTTATTCGTGTTTGGCGGTGTTGGAAGGTCATCGACGACCAGTGAAGTGTTTGGCTATGGCTGTTGACTCCAACAGTGGTGGTCCCGATGAGGATGATAGGTCTTATCTTGTTTACAGTGCAGGTTTGGACTGTGACATTAAAGTCTGGCAAATACGCGTTCCTTCGGTCTCATTGTGA 1233 0.5077 MGFLQHPLCRHSQQQQQKSYDHYHSESSTSSSLHSQPSLPSVPSLSSLTPQQPHHLQQQPQTTVKIHSSPISSLVLDGKLLYSAASSGEVKTCSRDPFILQTNTTTNTNVVVVETTNAPIKSLIVFHDTLFTAHQDHKIRVWKTDQPTKCIATLPTLHDRFSKLFSSKNYVEVRRHKKRTWVHHVDAVSTLALSHDGSLLYSASWDRTFKIWRTSDFKCLESVKNAHEDAINSLVLSNDGAVYTGSADTKIKMWKKREGEKKHSLVATLEKHKSAVNALALSADGSVLYSGACDRSILVWERDENDDNNMVVVGALRGHTKAILCLVVMADLVCSGSADNSVRVWRKEIEKGYSCLAVLEGHRRPVKCLAMAVDSNSGGPDEDDRSYLVYSAGLDCDIKVWQIRVPSVSL* 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu2g0788 410 SUPERFAMILY WD40 repeat-like 57 403 IPR036322 GO:0005515
Pvu2g0788 410 Pfam WD domain, G-beta repeat 354 401 IPR001680 GO:0005515
Pvu2g0788 410 Pfam WD domain, G-beta repeat 314 345 IPR001680 GO:0005515
Pvu2g0788 410 Pfam WD domain, G-beta repeat 179 212 IPR001680 GO:0005515
Pvu2g0788 410 Pfam WD domain, G-beta repeat 218 255 IPR001680 GO:0005515
Pvu2g0788 410 Pfam WD domain, G-beta repeat 265 300 IPR001680 GO:0005515
Pvu2g0788 410 Gene3D - 167 407 IPR015943 GO:0005515
Pvu2g0788 410 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 269 301 - -
Pvu2g0788 410 ProSiteProfiles Trp-Asp (WD) repeats profile. 224 264 IPR001680 GO:0005515
Pvu2g0788 410 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 316 345 - -
Pvu2g0788 410 ProSiteProfiles Trp-Asp (WD) repeats profile. 269 310 IPR001680 GO:0005515
Pvu2g0788 410 SMART WD40_4 309 346 IPR001680 GO:0005515
Pvu2g0788 410 SMART WD40_4 262 301 IPR001680 GO:0005515
Pvu2g0788 410 SMART WD40_4 174 213 IPR001680 GO:0005515
Pvu2g0788 410 SMART WD40_4 352 402 IPR001680 GO:0005515
Pvu2g0788 410 SMART WD40_4 106 143 IPR001680 GO:0005515
Pvu2g0788 410 SMART WD40_4 216 255 IPR001680 GO:0005515
Pvu2g0788 410 SMART WD40_4 57 94 IPR001680 GO:0005515
Pvu2g0788 410 MobiDBLite consensus disorder prediction 1 63 - -
Pvu2g0788 410 MobiDBLite consensus disorder prediction 8 63 - -
Pvu2g0788 410 ProSiteProfiles Trp-Asp (WD) repeats profile. 316 345 IPR001680 GO:0005515
Pvu2g0788 410 PANTHER SIMILARITY TO GTP-BINDING REGULATORY PROTEIN AND WD-REPEAT PROTEIN 18 406 - -
Pvu2g0788 410 PANTHER F-BOX AND WD40 DOMAIN PROTEIN 18 406 IPR045182 -
Pvu2g0788 410 CDD WD40 63 402 - -
Pvu2g0788 410 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 181 212 - -
Pvu2g0788 410 ProSiteProfiles Trp-Asp (WD) repeats profile. 181 222 IPR001680 GO:0005515
Pvu2g0788 410 Gene3D - 6 166 IPR015943 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu2g0788 Pvu-Chr2 11229882 11231663 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu2g0788 226 403 Miscellaneous Gene Families AT5G08390 25.543 7.48e-09 55.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu2g0788 - - vun:114174011 676.011
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu2g0788 2 11229882 11231663 Pvu2g0788 2 11229882 11231663 ECH