Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu2g0646 ATGCCACCCTCAAGTAGTTGTAAAATTTCTACGGTTAAAAATTATGGCCATCGATTATGGTTTTCGATAGTGAGAGCATTGGGATTACAAATGAGAAGTTCGAAGGAAGAGTCCGAAGACAGGGACGTGACTATAGCAAGAGGTGATGGAGAAGATGAATTGTGTTCTGGTTTTCAGGGATTGAAGTTTGACAGTGGAAGTGGTAGTGGTAAGAGAAAAAAAAGTATTCATCCCCCGATTGAAACGCATTGGGATCTGCATTCATCAGCGTCAGGGAAAAGGTCTAATTCGTCCCCTGTCAAGTCACTCTTGTCATACCCGTTCACGAAATTTAGGAAGAGTAAAAGCCTTGTGATGATTATTGAAGGAGCTCGTGATCCTAAGGATAAACAAATTGTCGACTCTTTTCGCCAAATGCTATTGCAAGAAGCTATCTTGCCACCTAAGCATGATGATTATCACACTCTTCTGAGGTTTCTGCGTATGAGGGATTTCGACATGCCAAAATCCAAAGAAATGTTCCAAAATTATCTCAAGTGGCGAAACGAATTTCGAGTAGACCTGCTTCCAAAGGAATTCCATTTCACGGAGTACAATGAAGTGAAGAACTGCTACCCTCATGGATACCACGGAGTTGACAGATACGGAAGACCCTTGTATATTGAGAGAATTGGGATGGTAGACCTTAACAAACTGGGGCAAGTTACCACATTTGAAAGGTTTATCAAACATCATGTGTCAGAACAAGAGAAAACTCTCAAACTAAGATTCCCTGCATGTTCTCTAGCAGCTAAAAGTCACATAGCATCCACTACAAGTATCTTGGATGTCAACGGAGTTGGAATGTCTAATTTCTCAAAGCCCGCGAGGTACCTCTTTATGGAAATTCAGAAGATCGATAGCTGTTACTATCCTGAGACTCTAAATAAGCTATTTATTATTAATGCCGGATCTGGGTTTAGGATGCTGTGGAAAGCAGTAAAGACATTCCTAGATGTACGCACAGTAGCAAAAATTCAGGTGTTGGGCTCTAATTATCTCGGTGTGCTGCTTGAGGCTATCGAGCCGAGTAATTTGCCAACTTTTCTGGGTGGTAATTGCACATGTTCCGATTATGGAGGTTGTCTGATGAGTGATCGAGGCCCCTGGAAAAATCCAGAAGTGTTGGAAATGATTAAGGTTGTTAACTTGAGAGAAGAGATTGATGGTAAATGCGAGGATGTTGAGGTGGCTACAGAAGATTCCTCGATGCCTAAAAAGGTTGACATGCAAACCGAAGATGACGATAATACTGCGAGTCTGCTTGAGGAGACAGCGTGCGCGGGGTCAGACTCTGCATGTACTTGTCGGTTAGCAATGCAAAAAATTGATTGCCTTGAAGCTAGTCTTGGAGACATAAAGGATAAAATCAAAACGCTGGAAGATGCACTTCAAGACACCAAGATGGCATTGAAAGAACATGCACATCATCCAGAACAGCCCACAGTATAA 1491 0.4212 MPPSSSCKISTVKNYGHRLWFSIVRALGLQMRSSKEESEDRDVTIARGDGEDELCSGFQGLKFDSGSGSGKRKKSIHPPIETHWDLHSSASGKRSNSSPVKSLLSYPFTKFRKSKSLVMIIEGARDPKDKQIVDSFRQMLLQEAILPPKHDDYHTLLRFLRMRDFDMPKSKEMFQNYLKWRNEFRVDLLPKEFHFTEYNEVKNCYPHGYHGVDRYGRPLYIERIGMVDLNKLGQVTTFERFIKHHVSEQEKTLKLRFPACSLAAKSHIASTTSILDVNGVGMSNFSKPARYLFMEIQKIDSCYYPETLNKLFIINAGSGFRMLWKAVKTFLDVRTVAKIQVLGSNYLGVLLEAIEPSNLPTFLGGNCTCSDYGGCLMSDRGPWKNPEVLEMIKVVNLREEIDGKCEDVEVATEDSSMPKKVDMQTEDDDNTASLLEETACAGSDSACTCRLAMQKIDCLEASLGDIKDKIKTLEDALQDTKMALKEHAHHPEQPTV* 497
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu2g0646 496 Gene3D - 186 406 IPR036865 -
Pvu2g0646 496 Gene3D - 113 184 - -
Pvu2g0646 496 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 197 371 IPR001251 -
Pvu2g0646 496 PANTHER PHOSPHATIDYLINOSITOL/PHOSPHATIDYLCHOLINE TRANSFER PROTEIN SFH11 69 492 - -
Pvu2g0646 496 SMART CRAL_TRIO_N_2 152 177 IPR011074 -
Pvu2g0646 496 Coils Coil 456 483 - -
Pvu2g0646 496 SUPERFAMILY CRAL/TRIO domain 197 391 IPR036865 -
Pvu2g0646 496 SUPERFAMILY CRAL/TRIO N-terminal domain 125 191 IPR036273 -
Pvu2g0646 496 CDD SEC14 195 366 IPR001251 -
Pvu2g0646 496 PANTHER CRAL-TRIO DOMAIN-CONTAINING PROTEIN YKL091C-RELATED 69 492 - -
Pvu2g0646 496 SMART sec14_4 197 368 IPR001251 -
Pvu2g0646 496 PRINTS Cellular retinaldehyde-binding protein signature 155 177 - -
Pvu2g0646 496 PRINTS Cellular retinaldehyde-binding protein signature 324 343 - -
Pvu2g0646 496 PRINTS Cellular retinaldehyde-binding protein signature 357 366 - -
Pvu2g0646 496 Pfam CRAL/TRIO domain 205 365 IPR001251 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu2g0646 Pvu-Chr2 6939894 6943643 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu2g0646 130 362 Acyl Lipid Metabolism Gene Families AT5G47730 27.273 1.27e-19 88.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu2g0646 - - vun:114174105 834.713
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu2g0646 2 6939894 6943643 Pvu2g0646 2 6939894 6943643 ECH