Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu2g0624 ATGGGTAAGGATCTGAGCGATGAGCAAGTTTCTGCGATGAAGGAGGCTTTCTCTCTATTCGACACAGACGGCGACGGTCGGATCGCGCCGTCGGAGCTCGGGATCCTGATGCGGTCACTTGGAGGCAACCCGACGCAGGCCCAACTAAAGTCCATCGTCGCCGAAGAGAATCTCACGGCCCCATTCGACTTCCCCCAATTCCTTGATCTCATGGCCAAACACGTCAAACCCGAACCCTTTGATCGCCAACTGCGCGACGCCTTCAAGGTCCTTGACAAGGATTCCACCGGCTTCGTTTCCGTCTCGGAGCTCCGACACATCCTCACCAACATCGGCGAGAAGCTCGAGCCCTCCGAGTTCGACGAGTGGATCAGGGAAGTCGACGTCGGCTCCGATGGCAAGATCCGCTACGAGGATTTCATCGCCAGAATGGTCGCTAAGTAG 444 0.5721 MGKDLSDEQVSAMKEAFSLFDTDGDGRIAPSELGILMRSLGGNPTQAQLKSIVAEENLTAPFDFPQFLDLMAKHVKPEPFDRQLRDAFKVLDKDSTGFVSVSELRHILTNIGEKLEPSEFDEWIREVDVGSDGKIRYEDFIARMVAK* 148
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu2g0624 147 ProSitePatterns EF-hand calcium-binding domain. 21 33 IPR018247 -
Pvu2g0624 147 Gene3D - 3 79 - -
Pvu2g0624 147 CDD EFh 14 55 IPR002048 GO:0005509
Pvu2g0624 147 ProSitePatterns EF-hand calcium-binding domain. 92 104 IPR018247 -
Pvu2g0624 147 ProSiteProfiles EF-hand calcium-binding domain profile. 8 43 IPR002048 GO:0005509
Pvu2g0624 147 ProSiteProfiles EF-hand calcium-binding domain profile. 115 147 IPR002048 GO:0005509
Pvu2g0624 147 Gene3D - 81 145 - -
Pvu2g0624 147 ProSiteProfiles EF-hand calcium-binding domain profile. 79 114 IPR002048 GO:0005509
Pvu2g0624 147 Pfam EF-hand domain 13 41 IPR002048 GO:0005509
Pvu2g0624 147 SUPERFAMILY EF-hand 5 144 IPR011992 -
Pvu2g0624 147 SMART efh_1 12 40 IPR002048 GO:0005509
Pvu2g0624 147 SMART efh_1 83 111 IPR002048 GO:0005509
Pvu2g0624 147 SMART efh_1 119 147 IPR002048 GO:0005509
Pvu2g0624 147 CDD EFh 83 144 IPR002048 GO:0005509
Pvu2g0624 147 PANTHER CALCIUM BINDING PROTEIN 1 147 - -
Pvu2g0624 147 Pfam EF-hand domain pair 82 144 IPR002048 GO:0005509
Pvu2g0624 147 PANTHER - 1 147 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu2g0624 Pvu-Chr2 6500779 6501668 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu2g0624 1 147 EF-hand Containing Proteins AT1G12310 85.811 3.83e-92 262
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu2g0624 K13448 - gmx:100500081 286.189
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu2g0624 2 6500779 6501668 Pvu2g0624 2 6500779 6501668 ECH