Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu2g0548 ATGAGTTTAGACTCGTCTCGCTCAGCTAATTCCAAACGAAGTTTCTCGAATTCTATATCTTCCAACCGCTCCAACGACAGCAGTAAAAAGAACAGCAAAAAGACGAAGACAATCACCAACCAGAAAACCCTAGGCGCTGCCTGGGGCTCAAATGCAAGCTCTCGCTCTTCCTCACGAAATTCCGCTTTCTCCGGTTTCACCAGTTATATGACGGAGAAGAATCGGAAGCTACACAACCAGTTTGACGCCGAGGCTTCCACTTCCTCTTTAAGTGACTCTGCTTCTGGGAAGCCTATATTCAGTGGAGTTTCGATTTTTGTTGATGGTTTCACGGTTCCTTCCAGCCAGGAACTGCGGAGCTACATGCTTAAGTATGGTGGAAGATTTGAGAATTATTTCTCTAGACATCGTGTAACACATATCATCTGCAGTAATCTGCCTGATAGTAAAGTTAAGAACCTCAGAGCATTCAGTGCAGGGTTGCCAGTGGTGAAACCCACTTGGATTTTAGATTCTGTTGCTGCTAATAGACTTCTGAGCTGGGTACCTTACCAACTCGACCAACTAGCTAATAAGCAATCAAAACTGTCGGCCTTCTTCACATTCAAAAGTAGTAAAATGTCAGAGGATGCTTTAACAAACTCCCTTTGTCAAGTAGTGTCAGATGTTGAAGATTCATCTATTAGGGTTGGTCAAACAGATTCTGAGGATAGAAACTTATCCAAAGTTGGGGAGATGAGTGAACATAGTGGGCAAATCAGTGCTGCATCTGATGATATTGTCTTGGAGAATAGTAATGCAATTATGACGGAGGAGTTGAATAGTGTTAGAATTAAGTTTGATGAAGACCAAGCAGCTGGAAGCAATGCTGCTACGAAAGATGAGAGTAATGTCAAAGGTGAACTTGAATCCACTAATCAAGCACCTTCTACATCATTTAGTTCTCACTGCTCAGAAGAGCAGAATGCAAGAGAATTTCCAAGTTCTTCAGGCACTAAGCCTTTTAAACAGTGTCATTCAACTTTTGCAGACCCTAATTTCGTGGAAAATTATTTTAAGAGCTCACGACTCCACTTTATAGGAACCTGGCGAAATCGGTATCGAAAGCGTTTTTCTGCCTCCTCTTCAGGGATTAAGAATGAAAATTCTATTATTAGTGGCTCTAGTATTTCTCATAATTCAGTTATTATCCATGTTGACATGGACTGCTTTTTTGTTTCAGTTGTTATCAGGAACCACCCTGAATTGTCGGATCAGCCTGTAGCTGTATGTCATTCAAATAATTCCAATGGAACTTCTGAGATTTCTTCTGCAAACTACCCAGCTCGTAGTCATGGTATTAGGGCTGGTATGTTTGTTCGAGATGCCAAGGCTCTTTATCCCGACCTGGTTATCTTTCCTTATAACTTTGAAGCTTATGAGGAAGTAGCTGATCAATTTTATAGTATATTGCACCAGCATTGCAACAAAGTGCAGGCTGTAAGCTGTGATGAAGCATTTTTAGATGTCACAGATTTAGAGGTTGAAGATCCCAAACTTTTAGCTTCATCTATTAGAGAAGAGATCTATAAGACCACTGGATGTACAGCTAGTGCTGGTATAGCTGGAAATATGCTTATGGCTCGTATTGCTACTAGAACTGCAAAACCAAATGGTCAATATCACATAACTACAGAAAAGGTTGAAGATCATTTATACCAACTCCCAATTAATTCACTTCCAGGAATTGGGCATGTTTTGCAGGAGAAATTGAAGAAACAGAATATTTACACTTGTGGACAACTGCGCATTATTTCCAAGGCCTCACTGCAGAGGGACTACGGTATAAAAACAGGAGAAATGCTGTGGAATTATAGCAGAGGAATTGATAACCGGTTAGTTGGGAACTTTCAGGAAAGCAAGACTGTTGGTGCTGATGTAAATTGGGGTGTAAGATTCAAAGATACAAAAGATTGTGAACACTTCCTAATAAATCTTTGCAAGGAGGTCTCATTACGATTGCAGTGTTGTGGAGTGCAGGGGCGCACTTTCACTCTAAAGATCAAAAAGAGAAGGAAAGGTGCTGACGAACCTGTAAAGTTTATGGGCTGTGGGGACTGTGAAAATTTGAGTCATTCTGTAACGGTTCCCCTTGCTACTGATAATGTGGAAATACTCCAAAGAATTGTAAAGCAGCTGTTTGGATGTTTTTACATAGATGTCAAGGAGATTCGAGGTATTGGTTTGCAAGTTTCCAGACTTGAAAGTGCAGAAGCTTCTAAACAAGGTACAACAAAATATACTTTGAAATCATGGCTCACTTCTGGATGTGCTAGTGTTGGAAATCAGAAATATCCTATAGGTCATGACAAGCAAAGCAGGGATAACACTTCCCGTCATGCATCTGTAAATCTGCCAGAGTCTTCGGTGGAAATGGACAATAAAATACCAAATAATGAAGCTAGTACTGACCCAATTTCAACACCCCCTCCTTTATGTAACCTTGACATGGAAGTTATAAGGAATCTTCCCCCAGAAGTATTTTCAGAATTAAATGAAATTTACAGAGGGAAGTTAATTGATTATATTGCCAACTGGAAAGACACAAGTGAGAGTTCTAGCCCTTCAGGAAACTCATTCTTGGAGCAAAAAGCAATAAACAATGAAGAGGAACTTTCCTATTCTGGGCCGATTCCTCAAAGCAATTTATTATCAAAAAATAAGGCAAAGCAGTATGTGTCGGGCACTAGTGAAGGCGAAGATATAACATATTCAGTGTGTGGACCCAGTTTCAAGGTCACACACCATTCTAGTTTTGAAAACAATGATTTATTGCCTTCTTCTTTGAGTCAAGTTGATGGTTCAGTGTTTCAACAATTGCCTGAGGATTTGAAAGCTGACATTGTTGAGCAGCTTCCTGCACACAGAAGGCCAGAGATATGCTCCAATGTTGTGATCCCTCCTCTTGAAAACAATTTGTTGTCAGTAGGCGTTGAAATTTCTGATAATTCTCCTATATCTAGTTATAATGACAGTCTATGGGTTGGAAATCCTCCAAATTGGGTTGGGAAGTTCAAAGGTAGCAGTTGCTTAATTTTAAAGAAACTTGCAGAAATGTATTTCAGATCAGGGTTGGAAAGCACATTATCTTCAGTTTTGCACCAAAATATATCTGAATTCTGTGAGCTAAATCTGGCCCAGCAGTTTTCTGATGAAACTGTTAACATTATGTGTGAGCTACTGAGGCAGTATATCAAAGTGAAGATAGAAAGAGATATTGAAGAGATTTATATTTGTTTTCGGCTTCTGAAAAGGTTTGCAGCTATGTCCCAATTTTTCCTACAGGTATATAATAGTGTGTATCCTTACCTTCAGGCAGCTGTTGAGGACAATTATGGAGGGACTTTACTTTTACCATCATAG 3402 0.398 MSLDSSRSANSKRSFSNSISSNRSNDSSKKNSKKTKTITNQKTLGAAWGSNASSRSSSRNSAFSGFTSYMTEKNRKLHNQFDAEASTSSLSDSASGKPIFSGVSIFVDGFTVPSSQELRSYMLKYGGRFENYFSRHRVTHIICSNLPDSKVKNLRAFSAGLPVVKPTWILDSVAANRLLSWVPYQLDQLANKQSKLSAFFTFKSSKMSEDALTNSLCQVVSDVEDSSIRVGQTDSEDRNLSKVGEMSEHSGQISAASDDIVLENSNAIMTEELNSVRIKFDEDQAAGSNAATKDESNVKGELESTNQAPSTSFSSHCSEEQNAREFPSSSGTKPFKQCHSTFADPNFVENYFKSSRLHFIGTWRNRYRKRFSASSSGIKNENSIISGSSISHNSVIIHVDMDCFFVSVVIRNHPELSDQPVAVCHSNNSNGTSEISSANYPARSHGIRAGMFVRDAKALYPDLVIFPYNFEAYEEVADQFYSILHQHCNKVQAVSCDEAFLDVTDLEVEDPKLLASSIREEIYKTTGCTASAGIAGNMLMARIATRTAKPNGQYHITTEKVEDHLYQLPINSLPGIGHVLQEKLKKQNIYTCGQLRIISKASLQRDYGIKTGEMLWNYSRGIDNRLVGNFQESKTVGADVNWGVRFKDTKDCEHFLINLCKEVSLRLQCCGVQGRTFTLKIKKRRKGADEPVKFMGCGDCENLSHSVTVPLATDNVEILQRIVKQLFGCFYIDVKEIRGIGLQVSRLESAEASKQGTTKYTLKSWLTSGCASVGNQKYPIGHDKQSRDNTSRHASVNLPESSVEMDNKIPNNEASTDPISTPPPLCNLDMEVIRNLPPEVFSELNEIYRGKLIDYIANWKDTSESSSPSGNSFLEQKAINNEEELSYSGPIPQSNLLSKNKAKQYVSGTSEGEDITYSVCGPSFKVTHHSSFENNDLLPSSLSQVDGSVFQQLPEDLKADIVEQLPAHRRPEICSNVVIPPLENNLLSVGVEISDNSPISSYNDSLWVGNPPNWVGKFKGSSCLILKKLAEMYFRSGLESTLSSVLHQNISEFCELNLAQQFSDETVNIMCELLRQYIKVKIERDIEEIYICFRLLKRFAAMSQFFLQVYNSVYPYLQAAVEDNYGGTLLLPS* 1134
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu2g0548 1133 CDD BRCT_Rev1 99 186 - -
Pvu2g0548 1133 Gene3D - 632 755 IPR036775 GO:0003684|GO:0006281
Pvu2g0548 1133 MobiDBLite consensus disorder prediction 37 61 - -
Pvu2g0548 1133 SUPERFAMILY DNA/RNA polymerases 389 627 IPR043502 -
Pvu2g0548 1133 MobiDBLite consensus disorder prediction 227 254 - -
Pvu2g0548 1133 Pfam BRCT domain, a BRCA1 C-terminus domain 97 184 IPR001357 -
Pvu2g0548 1133 PIRSF REV1 5 1127 IPR012112 GO:0003684|GO:0006281|GO:0016779|GO:0042276
Pvu2g0548 1133 MobiDBLite consensus disorder prediction 289 334 - -
Pvu2g0548 1133 Gene3D BRCT domain 89 186 IPR036420 -
Pvu2g0548 1133 MobiDBLite consensus disorder prediction 229 244 - -
Pvu2g0548 1133 MobiDBLite consensus disorder prediction 1 26 - -
Pvu2g0548 1133 Gene3D - 568 622 - -
Pvu2g0548 1133 CDD PolY_Rev1 347 747 - -
Pvu2g0548 1133 SUPERFAMILY BRCT domain 54 188 IPR036420 -
Pvu2g0548 1133 MobiDBLite consensus disorder prediction 1 61 - -
Pvu2g0548 1133 Gene3D - 413 467 - -
Pvu2g0548 1133 SUPERFAMILY Lesion bypass DNA polymerase (Y-family), little finger domain 632 745 IPR036775 GO:0003684|GO:0006281
Pvu2g0548 1133 Gene3D - 396 557 IPR043128 -
Pvu2g0548 1133 MobiDBLite consensus disorder prediction 777 823 - -
Pvu2g0548 1133 Pfam impB/mucB/samB family C-terminal domain 634 754 IPR017961 GO:0003684|GO:0006281
Pvu2g0548 1133 ProSiteProfiles BRCT domain profile. 95 186 IPR001357 -
Pvu2g0548 1133 MobiDBLite consensus disorder prediction 791 822 - -
Pvu2g0548 1133 SMART BRCT_7 97 176 IPR001357 -
Pvu2g0548 1133 MobiDBLite consensus disorder prediction 286 334 - -
Pvu2g0548 1133 Pfam impB/mucB/samB family 399 545 IPR001126 GO:0006281
Pvu2g0548 1133 Gene3D - 345 380 - -
Pvu2g0548 1133 PANTHER DNA REPAIR PROTEIN REV1 37 1128 - -
Pvu2g0548 1133 ProSiteProfiles UmuC domain profile. 396 577 IPR001126 GO:0006281
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu2g0548 Pvu-Chr2 4857631 4869426 Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu2g0548 K03515 - gmx:100778409 1799.25
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu2g0548 2 4857631 4869426 Pvu2g0548 2 4857631 4869426 ECH