Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu2g0543 ATGGCTGTAGCTATGTCTCTCTCTTTTGGGCTCTTCTCTTCCTCCATTCTCCCTCCAGAATCCCACACTCTGAGCTTGGCGAGGCCTTCGCGTTCTGCTTCTGCTTCTGGGCTGCGCATGGTGCGAACCGTTACCTCTTGCACCGTCTCTCACTCGGAGCAAGGAACCCGCAAAATCCGTGGCATCATGAAACCCCGCCGAGTGACCCCTGAGATGGCAGCCCTCGTCGGCGCTCAGGAGATTGCCAGAACCCAAGCCCTCAAACTCATTTGGGCTTATATCAAGGACAACAATCTCCAGGACCCTGAAGACAAGAGGACTATAAATTGTGATGAGAAGTTGAAGAAGATATTTGATGGGAGAGACCGAGTTGGTATGCTAGATGTTGCTCGTTTGATTAGCCCTCACTTCCTTAAAGCTGAAGTTTAG 429 0.5128 MAVAMSLSFGLFSSSILPPESHTLSLARPSRSASASGLRMVRTVTSCTVSHSEQGTRKIRGIMKPRRVTPEMAALVGAQEIARTQALKLIWAYIKDNNLQDPEDKRTINCDEKLKKIFDGRDRVGMLDVARLISPHFLKAEV* 143
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu2g0543 142 Pfam SWIB/MDM2 domain 64 137 IPR003121 -
Pvu2g0543 142 PANTHER SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY D 1 138 - -
Pvu2g0543 142 SUPERFAMILY SWIB/MDM2 domain 58 139 IPR036885 -
Pvu2g0543 142 CDD SWIB-MDM2_like 66 137 - -
Pvu2g0543 142 ProSiteProfiles SWIB/MDM2 domain profile. 61 139 IPR003121 -
Pvu2g0543 142 Gene3D SWIB/MDM2 domain 56 142 IPR036885 -
Pvu2g0543 142 PANTHER EXPRESSED PROTEIN-RELATED 1 138 - -
Pvu2g0543 142 SMART swib_2 62 142 IPR019835 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu2g0543 Pvu-Chr2 4820531 4821625 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SWI/SNF-BAF60b Pvu2g0543 SWIB 9.4e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu2g0543 - - gmx:100306198 176.022
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu2g0543 2 4820531 4821625 Pvu2g0543 2 4820531 4821625 ECH