Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu2g0534 ATGGGAATCCGATCGGTGTTTGACGGCGGCGAGCTGAGAAGGGAATTCGAGAAAAGGGGAATCGACGGAAAATTCGTCGGAATAATATGGAAGCATGTAATTGGGAATAATGCGAAGGGAGAAAGGGAAGAATGGAATTGGGAGAAGCAAGTGCCGTCGTTACCTTCTTCAGCATACGCTGTCCTTCGTTCCAACTTCGGAGGAACAAACCCTCTCTCTTCTTCTCTTCACTCTGTTTTCCACTCTTCCGACAACCTCACCTCCAAGCTTCTCATCAAGCTCAAGAATGGAGCATTCGTGGAGGCTGTGATAATGAGATATGATACTCGTTTGGGCATATACGCTGGCAAACCGCGTCCCGGTGGGCTACGAGCAACTTTGTGTATTTCATCGCAGGTAGGATGCAAAATGGGTTGCAAATTCTGTGCCACTGGATCCATGGGATTCAAAAATAACCTATCCTCTGGGGAAATTGTGGAACAGCTCGTCCATGCTTCTGCTTTTTCACAAATCCGTAATGTTGTCTTCATGGGAATGGGAGAGCCTCTCAACAACTATTCTGCTGTGGTAGAAGCGGTTCGCATCATGACTGGATTGCCGTTTCAATTGTCCTTGAAAAGGATTACCGTATCAACGGTTGGTATCATTCATGCTATCAACAAGCTTCATAATGACCTGCCTGGTTTGAACTTGGCAGTCTCACTGCATGCACCAGCCCAAGACATCCGTTGTCAGATAATGCCTGCTGCTCGTGCTTTCCCTTTGGAAAAACTTATGAATTCACTGCAAGAATATCAAAGAAAAAGTCTGCAGAAAATACTGATTGAATACATAATGCTTGACGGGGTGAATGACGAAGAGCAGCATGCCCACCAATTGGGAAAACTATTAGAGACATTTCAAGTGGTAGTGAACCTAATACCTTTCAACCCTATCGGTATCTTGAGTCAATTCAAACCTACCAGTGAGCAGAAGGTCTCAAATTTTCAGAAAATTCTCAGAGGTACATATAATATTCGAACAACAGTTAGGAAGCAGATGGGTCAAGACATAAGTGGTGCTTGTGGGCAATTGGTGGTTAACATACCAGACAAGTCTCTTGCCAGTGCAGAACCCCTGACAGACATAGAAGATCTTGTTATTTGA 1146 0.4459 MGIRSVFDGGELRREFEKRGIDGKFVGIIWKHVIGNNAKGEREEWNWEKQVPSLPSSAYAVLRSNFGGTNPLSSSLHSVFHSSDNLTSKLLIKLKNGAFVEAVIMRYDTRLGIYAGKPRPGGLRATLCISSQVGCKMGCKFCATGSMGFKNNLSSGEIVEQLVHASAFSQIRNVVFMGMGEPLNNYSAVVEAVRIMTGLPFQLSLKRITVSTVGIIHAINKLHNDLPGLNLAVSLHAPAQDIRCQIMPAARAFPLEKLMNSLQEYQRKSLQKILIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGILSQFKPTSEQKVSNFQKILRGTYNIRTTVRKQMGQDISGACGQLVVNIPDKSLASAEPLTDIEDLVI* 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu2g0534 381 ProSiteProfiles Radical SAM core domain profile. 121 350 IPR007197 GO:0003824|GO:0051536
Pvu2g0534 381 SFLD adenosine C2 methyltransferase (RlmN-like) 80 365 IPR004383 GO:0006364|GO:0008173
Pvu2g0534 381 Gene3D Aldolase class I 75 366 IPR013785 -
Pvu2g0534 381 PANTHER RADICAL SAM SUPERFAMILY PROTEIN 3 372 - -
Pvu2g0534 381 PANTHER 23S RRNA METHYLTRANSFERASE 3 372 IPR040072 -
Pvu2g0534 381 PIRSF Cfr 10 374 IPR004383 GO:0006364|GO:0008173
Pvu2g0534 381 CDD Radical_SAM 134 313 - -
Pvu2g0534 381 SFLD Radical SAM 80 365 IPR007197 GO:0003824|GO:0051536
Pvu2g0534 381 Pfam 4Fe-4S single cluster domain 134 218 - -
Pvu2g0534 381 SUPERFAMILY Radical SAM enzymes 126 314 - -
Pvu2g0534 381 Pfam Radical SAM superfamily 130 288 IPR007197 GO:0003824|GO:0051536
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu2g0534 Pvu-Chr2 4774424 4776886 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu2g0534 - - ccaj:109814608 661.759
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu2g0534 2 4774424 4776886 Pvu2g0534 2 4774424 4776886 ECH