Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu2g0219 ATGGTCTCCGAATCCGAACTCATCGGCCGCCTCCGCGAGTTCCTCCGGAACTCCGACCTTAACACCACCACCACCGCCACCGTCCGCCGCCAGTTGGAGGCTGATTTCGGAATCGATTTATCCCACCGCAAGGCATTCATTAGGGAACAGGTCGACTTGTTCCTCCAGACCGAGCACAACCAACCGCAACAACAACAGCAACAAAACGACGACGTACCAGAAGACGAAGAAGAAGAAGATGGCCCTGATAATCCCGAGCAGAGCCAACCATCCGATACCAAGGAACAATCCGAAGAAGACGACGATAACGATGAAGAGGAACGAGATAAACCTAAGCATTCCAAAAATGCCAAGAAGAATAAAGGACGATCTAACAAGTTAGGTGATGAGGTAGTAAAGAAAAGAGGTGGTGGATTTTGCAAATTATGTAGCCTGTCTCCCCAGCTTCAGGAATTCATGGGAGCTCCAGAAATGGCCAGGACTGAGGTTGTTAAGCAATTATGGGTCTATATTAAGGAGAAAAATTTGCAAGACCCAAGTAATGGACGAAATATAATTTGTGACGAGCGATTGCGGGCTCTTTTTAATGTCAACTCCATCAACATGTTCCAAATGAATAAGGTGTTGTCGAAGCATATCTGGCCATTGGATTCCGATGATGTTGTCCAGGTGAAATCCACACCAAAGGAAAAGCAGAAGAAGCACGAGAGAGATGATGATTCAGATGAGCCAAAAGGAAAGGAAAAACGGCAGAAGGGAGGAGGGAAGTCAGGTTTTCTTGCTCCTCTTCAGCTATCAGATGCCCTTGTAAACTTCCTTGGTACCGGAGAAAGTGAGTTATCAAGAACAGATGTTATAAAAAGAATGTGGGATTACATTAAAGGAAACAACCTTCAGGATCCTTCTAACAAGAGGCAAATACTATGTGACGAGAAGCTGAAAGAACTCTTTGATGTCGACTCCTTCAATGGCTTCACAGTTACAAAACTGCTGGCACCTCATTTTATAAAGACACAGCAGAACTGA 1026 0.4522 MVSESELIGRLREFLRNSDLNTTTTATVRRQLEADFGIDLSHRKAFIREQVDLFLQTEHNQPQQQQQQNDDVPEDEEEEDGPDNPEQSQPSDTKEQSEEDDDNDEEERDKPKHSKNAKKNKGRSNKLGDEVVKKRGGGFCKLCSLSPQLQEFMGAPEMARTEVVKQLWVYIKEKNLQDPSNGRNIICDERLRALFNVNSINMFQMNKVLSKHIWPLDSDDVVQVKSTPKEKQKKHERDDDSDEPKGKEKRQKGGGKSGFLAPLQLSDALVNFLGTGESELSRTDVIKRMWDYIKGNNLQDPSNKRQILCDEKLKELFDVDSFNGFTVTKLLAPHFIKTQQN* 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu2g0219 341 Pfam SWIB/MDM2 domain 142 213 IPR003121 -
Pvu2g0219 341 Pfam SWIB/MDM2 domain 262 335 IPR003121 -
Pvu2g0219 341 PANTHER SWIB COMPLEX BAF60B DOMAIN-CONTAINING PROTEIN 1 338 - -
Pvu2g0219 341 MobiDBLite consensus disorder prediction 70 85 - -
Pvu2g0219 341 MobiDBLite consensus disorder prediction 224 254 - -
Pvu2g0219 341 PANTHER SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY D 1 338 - -
Pvu2g0219 341 MobiDBLite consensus disorder prediction 59 130 - -
Pvu2g0219 341 CDD SWIB-MDM2_like 143 213 - -
Pvu2g0219 341 CDD SWIB-MDM2_like 263 335 - -
Pvu2g0219 341 Pfam DEK C terminal domain 2 55 IPR014876 -
Pvu2g0219 341 SUPERFAMILY DEK C-terminal domain 3 56 - -
Pvu2g0219 341 MobiDBLite consensus disorder prediction 224 260 - -
Pvu2g0219 341 Gene3D - 1 59 - -
Pvu2g0219 341 ProSiteProfiles SWIB/MDM2 domain profile. 258 337 IPR003121 -
Pvu2g0219 341 SUPERFAMILY SWIB/MDM2 domain 135 217 IPR036885 -
Pvu2g0219 341 SMART swib_2 259 340 IPR019835 -
Pvu2g0219 341 SMART swib_2 139 218 IPR019835 -
Pvu2g0219 341 Gene3D SWIB/MDM2 domain 253 341 IPR036885 -
Pvu2g0219 341 ProSiteProfiles SWIB/MDM2 domain profile. 138 215 IPR003121 -
Pvu2g0219 341 SUPERFAMILY SWIB/MDM2 domain 255 340 IPR036885 -
Pvu2g0219 341 Gene3D SWIB/MDM2 domain 133 221 IPR036885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu2g0219 Pvu-Chr2 2345717 2350932 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SWI/SNF-BAF60b Pvu2g0219 SWIB 3.1e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu2g0219 K15223 - gmx:100784838 564.303
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu2g0219 2 2345717 2350932 Pvu2g0219 2 2345717 2350932 ECH