Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu2g0044 ATGCAGCGTCACCGTTCATCAATCTTGGTGCGGTTTTTGACACGTTCATTTCGCAGTGTGCGTCATGTCTATGGCACCGATCATTCCCACTGCGAATGCGACGAGCCTCTGCTTCTTCACTACCTATCCAATGGCTGCCACCACCAAGCGCGAAACCTTCTTCAAAGTTCCTCCGGAGGTGACCTTCATGCACGCGTGGTTCGCTGGACGTCGCTGCTCTCCAACTTCTCCCGCTACGGTTACGTCGAGGAAGCTCGCACACTGTTCGACATAATGCCTCACAGAAACCTCGTCACTTTCAATGCCATGTTGACAGCGTACCTCCGCTCCGGCATGCTCGACGAGGCTTCCCGGTTCTTCGAAACCATGCCGGAGAAGAACGTTGTTTCATGGACTGCCATGATTTGTGGGTTTTCGGACGCCGGGAGGATCGAAGATGCGAGGAAGGTGTTTGAGATAATGCCTGAGAGGAATGTTGTTTCGTGGAACGCGATGGTGGTGGCGTTGCTTAGGAGTGGGGATTTGGAGAATGCGAGGGTGGTTTTTGAGGAGATTCCTTGCAAGAATGTGGTTTCGTGGAATGCTATGATTGCGGGGTATGCTGAGAGTGGTAGAATGAGCGAGGCTAGAGAACTGTTTCAAAAGATGGAGTTTAGGAATGTGATTACTTGGACTAGCATGGTATCTGGCTATTGCCGTGAGGGGGATGTTGAAGGTGCTTGTTGTTTCTTTCGGGCTATGCCGGAGAAAAATATTGTTTCTTGGACTGCTATGATTGGTGGGTTTGCTTGGAATGGCTTGTATGAAAAGGCATTGCTACTTTTTATTGAGATGGTGAGAGTTTCCAATGCGGAACCCAACGGAGAGACCTTTGTTTCTCTTGTTTATGCTTGTGGTGGTTTGGGTTTTTGTTGCCTTGGCAAGCAGGTACATGCTCAGCTGATTGTTAACAGCTGGCGGATTGATGATTATGATGGTAGGTTGCATAGAGGTCTTGTTAGGATGTACGCTGGGTTTGGTATTATGGATTCTGCTCGCAATGTGTTTGAAGGTAATCTGAAAGACTGTGATGATCAGTGTTTCAATTCCATGATAAATGGTTATGTTCGGGCCGGTCAGTTGGCAAGAGCTCAAGAGTTGTTTGACATGGTACCCATTCGGAATAAGGTTGCATCAACTTGCATGATCGCTGGCTATCTTAGCGCTGGCCAAGTACTCGAGGCTTGGAAATTGTTTAATGACATGCCTGATCGGGATTCCATTGCGTGGACTGAGATGATTTATGGGTATGTGCAGAATGAGCTCATTGCTGAAGCCTTCTGCTTATTTGCCGAGATGATGGATCATGGTGTTTCTCCTATGAGTTCTACATATGCTGTTCTATTCGGAGCGATGGGTTCAGTTGCATATCTAGATCAGGGGCGGCAATTACATGGTATGCAGTTCAAGACTGCGTCTGAAGATGATTTGATTCTTGAGAACTCTCTAATTTCAATGTATGCAAAATGTGGGGAGATAGATGATGCATATAGGGTATTCTCTAACATGACTTGCCGGGACAAAATATCTTGGAACTCCATGATTATGGGTCTTTCAGATCATGGGAGGGCCAGCGAAGCTTTAAAAGTGTACGAAGCTATGCTTGAATTTGGAATTTACCCAGATGACCTTACATTCCTGGGTGTCCTGACAGCATGTGCTCATGCGGGTCTTGTTGATAAAGGGTGGGAGTTTTTTATTACTATGGTTAATGCTTATGCTATTCAACCTAGCATGGAGCATTGCATCAGTATTATCAATCTTCTGGGTCGAGCAGGAAAGGTGAAGGAAGCAGAGGAGTTTGTTTTGAAGCTTCCTGTCAAACCAAATCATGCCGTTTGGGGTGCTCTGATTGGAGTGTGTGGGTTGAGTAAAGGTGATACAGATGTTGCTACGCGTGCAGCCAAAAGACTGTTTGAATTGGATCCTTTAAACGCACCTGGTCACGTGGCCCTTTGTAACATATATGCCGCAAATGATAGGCATATCGAGGAGATGAGATTAAGAGAAGAAATGAGGTTGAAGGGTGTGAAGAAGGCACCCGGATGTAGTTGGATATTGGTGAAGGGAACAGTTCATATTTTCTTCTCAGACGATAAATTGCATACGCGTCTTTAA 2157 0.4618 MQRHRSSILVRFLTRSFRSVRHVYGTDHSHCECDEPLLLHYLSNGCHHQARNLLQSSSGGDLHARVVRWTSLLSNFSRYGYVEEARTLFDIMPHRNLVTFNAMLTAYLRSGMLDEASRFFETMPEKNVVSWTAMICGFSDAGRIEDARKVFEIMPERNVVSWNAMVVALLRSGDLENARVVFEEIPCKNVVSWNAMIAGYAESGRMSEARELFQKMEFRNVITWTSMVSGYCREGDVEGACCFFRAMPEKNIVSWTAMIGGFAWNGLYEKALLLFIEMVRVSNAEPNGETFVSLVYACGGLGFCCLGKQVHAQLIVNSWRIDDYDGRLHRGLVRMYAGFGIMDSARNVFEGNLKDCDDQCFNSMINGYVRAGQLARAQELFDMVPIRNKVASTCMIAGYLSAGQVLEAWKLFNDMPDRDSIAWTEMIYGYVQNELIAEAFCLFAEMMDHGVSPMSSTYAVLFGAMGSVAYLDQGRQLHGMQFKTASEDDLILENSLISMYAKCGEIDDAYRVFSNMTCRDKISWNSMIMGLSDHGRASEALKVYEAMLEFGIYPDDLTFLGVLTACAHAGLVDKGWEFFITMVNAYAIQPSMEHCISIINLLGRAGKVKEAEEFVLKLPVKPNHAVWGALIGVCGLSKGDTDVATRAAKRLFELDPLNAPGHVALCNIYAANDRHIEEMRLREEMRLKGVKKAPGCSWILVKGTVHIFFSDDKLHTRL* 719
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu2g0044 718 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 520 554 IPR002885 -
Pvu2g0044 718 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 357 391 IPR002885 -
Pvu2g0044 718 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 489 519 IPR002885 -
Pvu2g0044 718 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 253 709 - -
Pvu2g0044 718 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 99 189 - -
Pvu2g0044 718 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 186 253 - -
Pvu2g0044 718 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 41 99 - -
Pvu2g0044 718 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 189 223 IPR002885 -
Pvu2g0044 718 Gene3D Tetratricopeptide repeat domain 324 386 IPR011990 GO:0005515
Pvu2g0044 718 Gene3D Tetratricopeptide repeat domain 387 473 IPR011990 GO:0005515
Pvu2g0044 718 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 158 188 IPR002885 -
Pvu2g0044 718 Gene3D Tetratricopeptide repeat domain 188 323 IPR011990 GO:0005515
Pvu2g0044 718 Gene3D Tetratricopeptide repeat domain 36 187 IPR011990 GO:0005515
Pvu2g0044 718 Gene3D Tetratricopeptide repeat domain 491 713 IPR011990 GO:0005515
Pvu2g0044 718 SUPERFAMILY TPR-like 128 675 IPR011990 GO:0005515
Pvu2g0044 718 Pfam PPR repeat 597 616 IPR002885 -
Pvu2g0044 718 Pfam PPR repeat 393 418 IPR002885 -
Pvu2g0044 718 Pfam PPR repeat 360 383 IPR002885 -
Pvu2g0044 718 Pfam PPR repeat 494 518 IPR002885 -
Pvu2g0044 718 Pfam PPR repeat 129 159 IPR002885 -
Pvu2g0044 718 Pfam PPR repeat 98 128 IPR002885 -
Pvu2g0044 718 Pfam PPR repeat 69 96 IPR002885 -
Pvu2g0044 718 PANTHER PENTATRICOPEPTIDE (PPR) REPEAT PROTEIN 41 99 - -
Pvu2g0044 718 PANTHER PENTATRICOPEPTIDE (PPR) REPEAT PROTEIN 99 189 - -
Pvu2g0044 718 PANTHER PENTATRICOPEPTIDE (PPR) REPEAT PROTEIN 253 709 - -
Pvu2g0044 718 PANTHER PENTATRICOPEPTIDE (PPR) REPEAT PROTEIN 186 253 - -
Pvu2g0044 718 Pfam PPR repeat family 250 298 IPR002885 -
Pvu2g0044 718 Pfam PPR repeat family 520 567 IPR002885 -
Pvu2g0044 718 Pfam PPR repeat family 419 465 IPR002885 -
Pvu2g0044 718 Pfam PPR repeat family 188 221 IPR002885 -
Pvu2g0044 718 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 96 130 IPR002885 -
Pvu2g0044 718 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 419 453 IPR002885 -
Pvu2g0044 718 Pfam E motif 640 699 IPR046848 -
Pvu2g0044 718 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 251 286 IPR002885 -
Pvu2g0044 718 TIGRFAM PPR: pentatricopeptide repeat domain 222 253 IPR002885 -
Pvu2g0044 718 TIGRFAM PPR: pentatricopeptide repeat domain 494 519 IPR002885 -
Pvu2g0044 718 TIGRFAM PPR: pentatricopeptide repeat domain 393 419 IPR002885 -
Pvu2g0044 718 TIGRFAM PPR: pentatricopeptide repeat domain 422 453 IPR002885 -
Pvu2g0044 718 TIGRFAM PPR: pentatricopeptide repeat domain 129 160 IPR002885 -
Pvu2g0044 718 TIGRFAM PPR: pentatricopeptide repeat domain 98 129 IPR002885 -
Pvu2g0044 718 TIGRFAM PPR: pentatricopeptide repeat domain 522 555 IPR002885 -
Pvu2g0044 718 TIGRFAM PPR: pentatricopeptide repeat domain 191 220 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu2g0044 Pvu-Chr2 559495 561831 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu2g0044 98 715 Glycoside Hydrolase AT3G49170 29.326 1.39e-80 272
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu2g0044 - - gmx:102669560 1218.76