Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Pvu2g0035 | ATGGCGCCTGTTTCAGCTTTAGCCAAGTACAAGTTGGTGTTCTTGGGCGACCAATCCGTCGGCAAAACCAGCATCATCACTCGCTTCATGTATGACAAATTCGATAACACCTATCAGGCTACAATTGGTATTGATTTTCTATCAAAAACTATGTATCTTGAAGATCGAACTGTTCGATTGCAGTTGTGGGATACAGCTGGCCAGGAAAGGTTTAGAAGTCTTATTCCAAGCTACATTAGGGACTCATCTGTAGCTGTCATTGTATATGATGTTGCAAGCAGGCAGACTTTCCTAAATACCGCCAAGTGGATTGAAGAGGTTCGAACAGAGAGAGGCAGTGATGTCATTATTGTTCTTGTTGGGAACAAAACTGATCTTGTTGAAAAAAGACAAGTCTCTATAGAGGAAGGGGAAGCAAAAGCACGTGAGCTCAATGTCATGTTCATTGAAACTAGCGCAAAGGCTGGATTTAATATAAAAGCCCTATTTCGAAAAATTGCTGCAGCATTACCTGGAATGGAAACACTATCCTCTGCAAAACAAGAAGACATGGTTGATGTAAACTTAGTGTCTACAACGGGCAACGCTCAGTCTCAACCTCAGTCAAGTGGATGTGCATGTTAA | 624 | 0.4183 | MAPVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVASRQTFLNTAKWIEEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIAAALPGMETLSSAKQEDMVDVNLVSTTGNAQSQPQSSGCAC* | 208 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Pvu2g0035 | 207 | SMART | ran_sub_2 | 15 | 207 | - | - | |
| Pvu2g0035 | 207 | ProSiteProfiles | small GTPase Rho family profile. | 3 | 179 | - | - | |
| Pvu2g0035 | 207 | TIGRFAM | small_GTP: small GTP-binding protein domain | 9 | 166 | IPR005225 | GO:0005525 | |
| Pvu2g0035 | 207 | ProSiteProfiles | small GTPase Rab1 family profile. | 5 | 207 | - | - | |
| Pvu2g0035 | 207 | CDD | Rab6 | 10 | 170 | - | - | |
| Pvu2g0035 | 207 | Pfam | Ras family | 11 | 169 | IPR001806 | GO:0003924|GO:0005525 | |
| Pvu2g0035 | 207 | SMART | rab_sub_5 | 10 | 173 | - | - | |
| Pvu2g0035 | 207 | PANTHER | DRAB5-RELATED | 1 | 207 | - | - | |
| Pvu2g0035 | 207 | ProSiteProfiles | small GTPase Ras family profile. | 5 | 207 | IPR001806 | GO:0003924|GO:0005525 | |
| Pvu2g0035 | 207 | SMART | ras_sub_4 | 7 | 173 | - | - | |
| Pvu2g0035 | 207 | SMART | rho_sub_3 | 12 | 172 | IPR001806 | GO:0003924|GO:0005525 | |
| Pvu2g0035 | 207 | PRINTS | Transforming protein P21 ras signature | 10 | 31 | - | - | |
| Pvu2g0035 | 207 | PRINTS | Transforming protein P21 ras signature | 33 | 49 | - | - | |
| Pvu2g0035 | 207 | PRINTS | Transforming protein P21 ras signature | 51 | 73 | - | - | |
| Pvu2g0035 | 207 | PRINTS | Transforming protein P21 ras signature | 113 | 126 | - | - | |
| Pvu2g0035 | 207 | PRINTS | Transforming protein P21 ras signature | 148 | 170 | - | - | |
| Pvu2g0035 | 207 | Gene3D | - | 6 | 203 | IPR027417 | - | |
| Pvu2g0035 | 207 | PANTHER | GTP-BINDING PROTEIN RAB6 | 1 | 207 | - | - | |
| Pvu2g0035 | 207 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 9 | 181 | IPR027417 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Pvu2g0035 | Pvu-Chr2 | 516190 | 519976 | Dispersed/Wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Pvu2g0035 | K07893 | - | gmx:100794537 | 394.815 |
Event-related genes