Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu2g0023 ATGCAGATCTTTGATCTATTTGATGTGAAGAAGAAAGGAGTGATTGACTTTGGTGATTTCGTTAGAGCACTCAATGTTTTTCACCCATCTGCACCAATAGAAGTCAAAATAGATTTTTCGTTTAAGCTGTACGATTTAGATAATACAGGATTCATAGAGCGTCACGAGGTGAAGCAAATGATAAATGCCCTTCTATGTGAAGCAGAAATTAAGTTATCAGATGACATGATAGAAACAATTATTAATAAGACTTTCATGGATGCTGACCCTAATCAAGATGGGAAAATAGACAAATATGAGTGGAAAAACTTTGTTTTCGAAAACCCTTCATTGTTAAAAGTCATGACGTTGCCCTACTTGAGGGACGTAACAACTGCGTTTCCAAGTTTTGTATTTCATTCGAAGGTGGAAGATGAAATTACAGAATAA 429 0.352 MQIFDLFDVKKKGVIDFGDFVRALNVFHPSAPIEVKIDFSFKLYDLDNTGFIERHEVKQMINALLCEAEIKLSDDMIETIINKTFMDADPNQDGKIDKYEWKNFVFENPSLLKVMTLPYLRDVTTAFPSFVFHSKVEDEITE* 143
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu2g0023 142 SMART efh_1 36 64 IPR002048 GO:0005509
Pvu2g0023 142 SMART efh_1 80 108 IPR002048 GO:0005509
Pvu2g0023 142 SMART efh_1 1 27 IPR002048 GO:0005509
Pvu2g0023 142 ProSiteProfiles EF-hand calcium-binding domain profile. 1 30 IPR002048 GO:0005509
Pvu2g0023 142 PRINTS Recoverin family signature 3 24 - -
Pvu2g0023 142 PRINTS Recoverin family signature 50 68 - -
Pvu2g0023 142 PRINTS Recoverin family signature 96 116 - -
Pvu2g0023 142 Pfam EF-hand domain pair 36 103 IPR002048 GO:0005509
Pvu2g0023 142 SUPERFAMILY EF-hand 2 130 IPR011992 -
Pvu2g0023 142 Gene3D - 1 139 - -
Pvu2g0023 142 PANTHER CALCINEURIN B-LIKE PROTEIN 2 141 - -
Pvu2g0023 142 PANTHER CALCINEURIN B 2 141 IPR045198 GO:0005509|GO:0019722|GO:0019900
Pvu2g0023 142 CDD EFh 36 105 IPR002048 GO:0005509
Pvu2g0023 142 ProSitePatterns EF-hand calcium-binding domain. 45 57 IPR018247 -
Pvu2g0023 142 ProSiteProfiles EF-hand calcium-binding domain profile. 32 67 IPR002048 GO:0005509
Pvu2g0023 142 ProSiteProfiles EF-hand calcium-binding domain profile. 76 111 IPR002048 GO:0005509
Pvu2g0023 142 ProSitePatterns EF-hand calcium-binding domain. 89 101 IPR018247 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu2g0023 Pvu-Chr2 224863 226115 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu2g0023 2 141 EF-hand Containing Proteins AT4G17615 73.571 7.61e-74 218
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu2g0023 K06268 - gmx:100779020 251.521
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu2g0023 2 224863 226115 Pvu2g0023 2 224863 226115 ECH
Pvu2g0023 2 224863 226115 Pvu3g2325 3 44590384 44594563 PCT