Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g2773 ATGGGCAAGAAAGTCAGAAAGAAGAGTCGTGGTTCTGCCAAGGAGAAGGTGGTTGCTACCCATTTGCCAAAAAAGGTTATTGAATCAACCAACCCGACCGTCGAGTCTGTTGACGAGGGCGTGTTGATTCCAAAAGAGACAAAACTTTGCCCTCATCTCGTTAAAGGTGTTAATTTAAGCAGATTGTCCACCAAGGTTGAGTCTTGTGGATCCGTAAGGTGTGAAGATTGTATAGAAGGTGCCACTGATAGAAGGAGTGGTAAAGGAAAAGGTAAACATGGGAAGAAGAAAGGTGGTGCATCACTAGATTCAAAATCTGAGACAAAGTCTATATGGGTTTGTTTGGAGTGTGGTCAGTATACCTGTGGAGGCGTGGGGCTACCAATAACCCCTCACTGCCATGTCGTAGGGCATGCGAGGAAAAACCGTCACCACTTGGTGGTTCATTTTGATAAGCCTCAACTGTGTTGGTGTTTTCCTTGCAGCATGCTTATTCAAGTTGATAATATTGAAAAAACTGATGAATCGAGTCATCTTCTTTCTGATGTTGTGAAATTGTTGAAAGGACGATCACAAGAAAAATCTTCAGTGGATATTGAAGACGTTTCCGCTGGGGATGGCAGTATTACTTCGGATATTAAGTCAAGAGCTCTGTTCACAAATGATTCGACTGTACAAGGTGGTTATGTAGTTAGAGGTATGCTTAATCTGGGGAATACTTGCTTCTTCAATTCAGTCATGCAAAATCTGCTGGCCATGAATAGATTGCGGGACGACTTTCTAAAGTTAGATGCTCCAGTCGGGCCACTTATTAGTTCCTTGAAGAAGCTTTTCACTGAAACAAACCCTGTATCAGGATTGAAAAATGTTATAAATCCTAGATCCTTTTTTGGCTGTGTCTGTTCTAAGTCTCCCCAATTTCGAGGATATCAGCAGCATGACAGTCATGAATTGCTCCGTTGTTTACTCGATGGTTTAAGTACTGAAGAACTGGCTGGAAGAAAGCAGAATGGTTTTCCAAAGAGAGATGGGACCTCTTCCAATACGTTAGTTGATGCTTTATTTGGGGGTCAGATATCAAGTACTGTATGCTGCATAGAATGTGGGCATTTCTCAACAGTGTATGAACCTTTTTTAGATCTTTCACTTTCTGTTCCAACTAAGAAACCTCCTCTTCGGAAGGCCCAACAAGTACCTCGAACCAAGAAAGGTAAACTTCCAGCAAAAAAAGGAGGAAAAACTCGAGTAAAAGTTAACAGGGATACTGATCCCTCACCTGTTCAAACTCTATCAAGCCAATTAACCAGCCACCAATCATATTGCCCTGATCAGTCAGCTGCCGGAGAGATGGGAACTTCTTCTGGTTATTCGACATTGTTAGGTTCTGAACAAATAAACAGCGTGGCTAATAAAGAGGAGTTGTCTTCATCTAATTTGGTTATTGCTGGAGAGCCTCAACGTAAGCAAGTTCTTGAAAATGGTGCAATGAAAACATCAGAAGATTTTTCATGGTTGGATTATGTGGAAGCTGGAACAATGATACATGAGTGTGATTTTATTTCCCAAAAGGAGGATGCTCCAGTGGTACAGGATACTGAGAGCAAAGATGAATGTTCAAACGAATTCCGTGGACAGCCCAGCAGTGAGTCCAATGGTCCTGTTTGTTTCCCTAAGGATGATCAGAACCTAAGACCCGAATTTTCTTCAGCAAATGGATGGGAAGATGAGGTTCCATTACAAGTTCAAGATTCAGAAGTGCTGTTACTTCCATACAAAGAAGAAAGTTCCTCGGCTGCTGAGCTCATAGGAGGAGATGGCGAGGCCTCCTCGTCAGTTTTGGGTGGTCGTCCAGAAGAATTGGAGTTTGATGGCTTTGGTGACTTATTCAACGAGCCTGAAGTTGTTGCTGGGCCTGCTCCTAGACCATCTTCATGTAGTGAGGGCATGGAAGCTAGTTTTATCATTGGAAGTAATAGTGAGTCCGATCCAGATGAAGTAGATGACACAGATTCTCCTGTCTCTGTAGAGAGTTGCTTGGCACATTTTATAAAACCTGAGCTTCTCTCGGATGAAAATGCTTGGCATTGTGAGAATTGTTCAAAAGTTCTCCGTCAAAAGATGGAAAAAGAAAAGCAGGCAAGAGCTGTATCTGATGGAAACGAGTCTGGTATTCATGATGAACCACGGCATGCAGTTAATTCTTGTTCTGTTAATGTCAGAACCAATGGAAATGGTAGCATAAAAAATCACCAAAACATAGAAAGTTTAGTCTCACGGGATAAACATGACACAAAGCTTGAAAATGGTCAAAGGGATGAGCTTAGTTTAGTCCTTAATGAAAGGGACAGTGGGGCATTCGAAATGGAAGGTACTCATAATGATGAGTTACAGTCGTCAAGGTTTCATAATGTTTGCGATGAAGAAAGCTGCAGTAATTTAGATGCTGATTCGTGTACTGCAGAAAATGTCCAAAGAAATTCTCCGATGATAGATAATGATAACAATGAGTCGGAGGATGCGGACTCCAACAGTGTGAAAGTGAAGAGGGATGCAACCAAGAGGGTCCTCATATATAAAGCTCCGCCTGTCTTGACGATTCATTTGAAGAGATTCAGCCAAGATGCTCGTGGTCGCTTAAGTAAATTAAATGGCCATGTCAATTTCAGAGAAAAAATGGATATTAGACCATATATTGATCCCAGGTGCATAATTGAAGAGAAGTATGAATACCAATTGGTTGGTTTAGTGGAGCATTCGGGAACAATGAGAGGAGGTCACTATGTTGCCTATGTGAGAGGGGGGCACAGGAACAGTGGGAAAGAGAATGAGGGTTCCACTTCCACATGGTATCAGGCAAGTGATGCATATGTGCGTGAAGTTTCCCTTGATGAAGTTCTTCGCTGTGAGGCATACATTTTATTCTACGAAAAAGCTTGA 2937 0.4205 MGKKVRKKSRGSAKEKVVATHLPKKVIESTNPTVESVDEGVLIPKETKLCPHLVKGVNLSRLSTKVESCGSVRCEDCIEGATDRRSGKGKGKHGKKKGGASLDSKSETKSIWVCLECGQYTCGGVGLPITPHCHVVGHARKNRHHLVVHFDKPQLCWCFPCSMLIQVDNIEKTDESSHLLSDVVKLLKGRSQEKSSVDIEDVSAGDGSITSDIKSRALFTNDSTVQGGYVVRGMLNLGNTCFFNSVMQNLLAMNRLRDDFLKLDAPVGPLISSLKKLFTETNPVSGLKNVINPRSFFGCVCSKSPQFRGYQQHDSHELLRCLLDGLSTEELAGRKQNGFPKRDGTSSNTLVDALFGGQISSTVCCIECGHFSTVYEPFLDLSLSVPTKKPPLRKAQQVPRTKKGKLPAKKGGKTRVKVNRDTDPSPVQTLSSQLTSHQSYCPDQSAAGEMGTSSGYSTLLGSEQINSVANKEELSSSNLVIAGEPQRKQVLENGAMKTSEDFSWLDYVEAGTMIHECDFISQKEDAPVVQDTESKDECSNEFRGQPSSESNGPVCFPKDDQNLRPEFSSANGWEDEVPLQVQDSEVLLLPYKEESSSAAELIGGDGEASSSVLGGRPEELEFDGFGDLFNEPEVVAGPAPRPSSCSEGMEASFIIGSNSESDPDEVDDTDSPVSVESCLAHFIKPELLSDENAWHCENCSKVLRQKMEKEKQARAVSDGNESGIHDEPRHAVNSCSVNVRTNGNGSIKNHQNIESLVSRDKHDTKLENGQRDELSLVLNERDSGAFEMEGTHNDELQSSRFHNVCDEESCSNLDADSCTAENVQRNSPMIDNDNNESEDADSNSVKVKRDATKRVLIYKAPPVLTIHLKRFSQDARGRLSKLNGHVNFREKMDIRPYIDPRCIIEEKYEYQLVGLVEHSGTMRGGHYVAYVRGGHRNSGKENEGSTSTWYQASDAYVREVSLDEVLRCEAYILFYEKA* 979
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g2773 978 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 233 248 IPR018200 GO:0004843|GO:0006511
Pvu1g2773 978 MobiDBLite consensus disorder prediction 390 455 - -
Pvu1g2773 978 CDD Peptidase_C19K 803 976 - -
Pvu1g2773 978 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 3 977 - -
Pvu1g2773 978 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 232 978 IPR028889 -
Pvu1g2773 978 SMART Zf_UBP_1 102 155 IPR001607 GO:0008270
Pvu1g2773 978 MobiDBLite consensus disorder prediction 84 103 - -
Pvu1g2773 978 Pfam Zn-finger in ubiquitin-hydrolases and other protein 106 168 IPR001607 GO:0008270
Pvu1g2773 978 Pfam Ubiquitin carboxyl-terminal hydrolase 233 975 IPR001394 GO:0004843|GO:0016579
Pvu1g2773 978 MobiDBLite consensus disorder prediction 395 413 - -
Pvu1g2773 978 SUPERFAMILY RING/U-box 50 168 - -
Pvu1g2773 978 MobiDBLite consensus disorder prediction 421 455 - -
Pvu1g2773 978 SUPERFAMILY Cysteine proteinases 231 977 IPR038765 -
Pvu1g2773 978 MobiDBLite consensus disorder prediction 536 562 - -
Pvu1g2773 978 ProSitePatterns Ubiquitin specific protease (USP) domain signature 2. 910 927 IPR018200 GO:0004843|GO:0006511
Pvu1g2773 978 Gene3D Cysteine proteinases 215 443 - -
Pvu1g2773 978 ProSiteProfiles Zinc finger UBP-type profile. 48 184 IPR001607 GO:0008270
Pvu1g2773 978 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 1 3 977 - -
Pvu1g2773 978 MobiDBLite consensus disorder prediction 825 846 - -
Pvu1g2773 978 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 45 184 IPR013083 -
Pvu1g2773 978 Gene3D Cysteine proteinases 748 978 - -
Pvu1g2773 978 Gene3D Cysteine proteinases 642 718 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g2773 Pvu-Chr1 52037542 52042355 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g2773 851 978 Miscellaneous Gene Families AT2G24640 34.351 5.56e-13 70.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g2773 K11844 - gmx:100780952 1620.52