Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g2771 ATGGTGATGAGTTTATCATTTTCTTCGGTGACAGTAAAGCCTTGTTCCATGAGCGTGAGCAATAAGAAAGCAGGTTGTTGTGGAAGAAGATTCAGTGTTACGAGGTCAGAAATAACCTTGGCTCCCAAACCCAAACAAGGAAGACAACAATTATCGCAGCAAGGATTTCCTCTAACGGATTTACATGTACAAGAGGTTGTTCAGAGGCAGTCTCAAATCATTAGTCCTTGTACCAAGCCTAAGCGACAGTTTCATTCCAGTTTTCTCAATGACGCCTATGAAATGTGCAGAAATATCTGCGCCGAGTATGCCAAGACCTTCTATCTAGGAACCTTGCTTATGACGGAAGAAAGACAGAAAGCTATATGGGCAATTTATGTTTGGTGCAGGAGGACGGATGAGCTGGTTGATGGTCCTAACGCGGCCTATATGAGCTCTGGTGTTCTTGATAGGTGGGAAGATAGATTGCATGATATTTTCAATGGACATCCCTATGATATGCTTGATGCTGCTCTTACTCACACCCTCTCCAAGTTTCCCTTGGATATTAAGCCTTTCAGAGACATGATACAAGGAATGAGAATGGATACAAGGAAAGCCCGCTACAACAATTTCCAAGAGCTTTATCTTTACTGTTACTATGTGGCAGGAACTGTTGGCTTAATGACCGTTCCAATAATGGGTATAGCACAGGATTCGGTCGCCCCTGTACAAAATGTATATGATGCTGCACTTTATCTGGGTATAGGAAATCAACTCACCAACATTCTTAGAGATGTCGGAGAGGATGCATTAAGAGGTAGAGTGTACCTTCCCCAAGACGAACTGGCCCAGTTTGGATTATGTGACAAGGATGTGTTTTCAAGAAATGTGAGTGAAAGATGGAGAAAGTTTATGAAACATCAAATAACGAGGGCAAGATTCTACTTCAACCGGGCAGAAGAAGGAGTTTCTCAGCTAGAAAAGGCCAGCTGTTGGCCGGTTTGGTCCTCATTGATATTGTATCGTAAGATCCTGGATGCAATTGAAGACAACGATTACGACAATTTGACTAAACGAGCTTATGTTGGACGAGCTAACAAACTGTTTACGTTGCCTCAAGCTTATACCAGATCTCTCTCAAATCGCAACACCAAATTTCGTCCGTTTTTGACAAGGCTTATTTAG 1167 0.4242 MVMSLSFSSVTVKPCSMSVSNKKAGCCGRRFSVTRSEITLAPKPKQGRQQLSQQGFPLTDLHVQEVVQRQSQIISPCTKPKRQFHSSFLNDAYEMCRNICAEYAKTFYLGTLLMTEERQKAIWAIYVWCRRTDELVDGPNAAYMSSGVLDRWEDRLHDIFNGHPYDMLDAALTHTLSKFPLDIKPFRDMIQGMRMDTRKARYNNFQELYLYCYYVAGTVGLMTVPIMGIAQDSVAPVQNVYDAALYLGIGNQLTNILRDVGEDALRGRVYLPQDELAQFGLCDKDVFSRNVSERWRKFMKHQITRARFYFNRAEEGVSQLEKASCWPVWSSLILYRKILDAIEDNDYDNLTKRAYVGRANKLFTLPQAYTRSLSNRNTKFRPFLTRLI* 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g2771 388 PANTHER BIFUNCTIONAL LYCOPENE CYCLASE/PHYTOENE SYNTHASE 9 379 - -
Pvu1g2771 388 SFLD Isoprenoid Synthase Type I 90 373 - -
Pvu1g2771 388 SUPERFAMILY Terpenoid synthases 91 376 IPR008949 -
Pvu1g2771 388 Pfam Squalene/phytoene synthase 103 358 IPR002060 GO:0009058
Pvu1g2771 388 ProSitePatterns Squalene and phytoene synthases signature 2. 247 272 IPR019845 GO:0016765
Pvu1g2771 388 SFLD Phytoene synthase like 90 373 IPR044843 GO:0004311
Pvu1g2771 388 CDD Trans_IPPS_HH 94 361 IPR033904 GO:0004311
Pvu1g2771 388 Gene3D Farnesyl Diphosphate Synthase 84 371 IPR008949 -
Pvu1g2771 388 PANTHER PHYTOENE SYNTHASE, CHLOROPLASTIC 9 379 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g2771 Pvu-Chr1 52027494 52029564 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g2771 K02291 - gmx:100782394 640.573