Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g2770 ATGTGCACGGTGTCAGGTTCTATCCTTCTGCTTCTGTGCTGCCCTTCTTCTTCTTCTTCTTCAATATCACTCCTTTGTTGTTATTCCAAAACCAGAACCAAAAAGAGAATTGGCAATGGCATAACCCATTTAAGTGTGGCCACCGCCACTTGTGCTATGGCCAAAGATGTGTGGAGCCGAACAAGTGGATCTGCATCCTCCTCTCCCATTCCCAGGGAACGTGGCAGTAGTAGGCAGCAACAAGCTACGTTCCTGGACCGCAGTATGGACATGGAAGAGCTATTAGCGGCAATTGGGGAAACCCAGAACGAGGATGAACTGTATGCGGTAATGTCCCCCTACAGCGGTAGGCAGCTGTCTATGCGCTTCATGGTTTCGCTGCTCTCCCGCGAGCCCGATTGGCAACGCACCGTTGCCCTTCTCGATTGGATAAACGAAAAGGCCCTCTATTCCCCTTCCCTCTTCGCCTACAACGTCGTACTCCGCAACGTCCTTCGGGCCAAGCAGTGGCACCTCGCCCACGGCCTGTTTGACGAAATGCGCCACAAGGGCCTTTCCCCCGATAGGTACACCTACTCCACCCTCATCACTTCTTTCGCCAAAGACGGCTTGTTTGATTCTTCTCTCTTTTGGCTCCAGCAGATGGAGCAAGACAACGTTTCCGGCGACCTTGTCCTCTACAGTAATTTGATCGACCTTGCCCGCAAGTTGTGCGATTACTCCAAGGCCATTTCCATCTTCAACAGATTGAAAGCCTCCGCCATTACCCCCGACCTCATTGCCTATAACTCCATGATCAATGTCTTTGGAAAAGCCAAGCTCTTCCGCGAGGCTCGCCTTCTTCTTCAAGAGATGGCCGACAATGCTGTTCAACCCGACACCGTCAGCTATTCCACGCTTCTTGCCATCTACGTTGACAATCAAAAGTTTGTTGAAGCGCTTTCTCTGTTCTCTCAAATGAATGAAGCCAAATGCCCCCTTGATCTCACCACCTGTAACATCATGATTGATGTTTATGGCCAGCTTCACATGCCCAAGGAAGCGGATCGCCTCTTCTGGAGCATGAGGAAAATGGAGATTCAGCCCAATGTGGTTAGCTACAATACGCTCTTGAGGGTTTATGGAGATGCTGAGCTATTTGGGGAAGCCATCCATCTGTTTCGCTTGATGCAGAGTAAGGATGTACCGCAGAATGTTGTCACCTACAACACTATGATTAACATCTATGGCAAGACCCTTGAGCACGAGAAGGCTACCAATCTCGTTCAAGAAATGAAGAAAAGGGATATTGAACCCAATGCCATCACTTATTCGACTATAATATCCATTTGGGAAAAGGCAGGCAAACTGGACCGCGCAGCTATCTTGTTTCAAAAATTAAGGAGTTCAGGAGTTCGAATTGACGAGGTTCTTTACCAGACAATGATTGTAGCCTACGAGAGGGCAGGTTTAGTTGCTCATGCCAAGCGTCTGCTGCATGAGCTGAAGAGACCGGACAACATTCCCAGGGAGACTGCAATTGTAATTCTTGCCAGAGCTGGTAGAATTGAAGAGGCTACCTGGGTTTTTCGTCAGGCTTTTGATGCTGGAGAAGTCAAAGATATATCTGTGTTTGGGTGCATGATTAATCTTTTCTCTAAGAACAAAAAGTATAGCAATGTAGTTGAAGTGTTTGAGAAGATGAGACAGGTGGGATATTTTCCTGATTCTGATGTTATTGCTCTCGTGCTGAATGCTTTTGGAAAGCTGCGAGAATTTGATAAAGCAGATGGTTTATATAGACAGATGCACGAGGAAGGGTGTGTTTTTCCAGATGAAGTTCATTTCCAGATGCTGAGTCTATATGGTGCAAGAAAGGATTTCATGATGGTAGAGTCATTGTTTGAGAAGCTGGATTCCAATCCTAATGTCAATAAGAAGGAGTTGCATCTTGTTGTTGCTAGCATTTATGAGCGAGCAGATAGACTTAACGATGCTTCCCGAGTCATGAATAAGACGAACCAAAAAGCAATCAGAAGTCACGATCACACTTAG 2034 0.4685 MCTVSGSILLLLCCPSSSSSSISLLCCYSKTRTKKRIGNGITHLSVATATCAMAKDVWSRTSGSASSSPIPRERGSSRQQQATFLDRSMDMEELLAAIGETQNEDELYAVMSPYSGRQLSMRFMVSLLSREPDWQRTVALLDWINEKALYSPSLFAYNVVLRNVLRAKQWHLAHGLFDEMRHKGLSPDRYTYSTLITSFAKDGLFDSSLFWLQQMEQDNVSGDLVLYSNLIDLARKLCDYSKAISIFNRLKASAITPDLIAYNSMINVFGKAKLFREARLLLQEMADNAVQPDTVSYSTLLAIYVDNQKFVEALSLFSQMNEAKCPLDLTTCNIMIDVYGQLHMPKEADRLFWSMRKMEIQPNVVSYNTLLRVYGDAELFGEAIHLFRLMQSKDVPQNVVTYNTMINIYGKTLEHEKATNLVQEMKKRDIEPNAITYSTIISIWEKAGKLDRAAILFQKLRSSGVRIDEVLYQTMIVAYERAGLVAHAKRLLHELKRPDNIPRETAIVILARAGRIEEATWVFRQAFDAGEVKDISVFGCMINLFSKNKKYSNVVEVFEKMRQVGYFPDSDVIALVLNAFGKLREFDKADGLYRQMHEEGCVFPDEVHFQMLSLYGARKDFMMVESLFEKLDSNPNVNKKELHLVVASIYERADRLNDASRVMNKTNQKAIRSHDHT* 678
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g2770 677 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 328 362 IPR002885 -
Pvu1g2770 677 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 534 568 IPR002885 -
Pvu1g2770 677 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 363 397 IPR002885 -
Pvu1g2770 677 Gene3D Tetratricopeptide repeat domain 237 380 IPR011990 GO:0005515
Pvu1g2770 677 Pfam PPR repeat 470 497 IPR002885 -
Pvu1g2770 677 Pfam PPR repeat 537 565 IPR002885 -
Pvu1g2770 677 Pfam PPR repeat 576 601 IPR002885 -
Pvu1g2770 677 Gene3D Tetratricopeptide repeat domain 381 508 IPR011990 GO:0005515
Pvu1g2770 677 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 433 467 IPR002885 -
Pvu1g2770 677 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 569 603 IPR002885 -
Pvu1g2770 677 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 258 292 IPR002885 -
Pvu1g2770 677 PANTHER OS03G0856100 PROTEIN 35 669 - -
Pvu1g2770 677 SUPERFAMILY HCP-like 211 429 - -
Pvu1g2770 677 TIGRFAM PPR: pentatricopeptide repeat domain 295 328 IPR002885 -
Pvu1g2770 677 TIGRFAM PPR: pentatricopeptide repeat domain 261 294 IPR002885 -
Pvu1g2770 677 TIGRFAM PPR: pentatricopeptide repeat domain 331 364 IPR002885 -
Pvu1g2770 677 TIGRFAM PPR: pentatricopeptide repeat domain 400 434 IPR002885 -
Pvu1g2770 677 TIGRFAM PPR: pentatricopeptide repeat domain 190 223 IPR002885 -
Pvu1g2770 677 TIGRFAM PPR: pentatricopeptide repeat domain 537 569 IPR002885 -
Pvu1g2770 677 TIGRFAM PPR: pentatricopeptide repeat domain 365 396 IPR002885 -
Pvu1g2770 677 TIGRFAM PPR: pentatricopeptide repeat domain 156 188 IPR002885 -
Pvu1g2770 677 TIGRFAM PPR: pentatricopeptide repeat domain 576 605 IPR002885 -
Pvu1g2770 677 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 153 187 IPR002885 -
Pvu1g2770 677 Pfam PPR repeat family 152 201 IPR002885 -
Pvu1g2770 677 Pfam PPR repeat family 257 301 IPR002885 -
Pvu1g2770 677 Pfam PPR repeat family 398 442 IPR002885 -
Pvu1g2770 677 Pfam PPR repeat family 328 372 IPR002885 -
Pvu1g2770 677 Gene3D Tetratricopeptide repeat domain 509 620 IPR011990 GO:0005515
Pvu1g2770 677 Gene3D Tetratricopeptide repeat domain 101 236 IPR011990 GO:0005515
Pvu1g2770 677 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 188 222 IPR002885 -
Pvu1g2770 677 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 293 327 IPR002885 -
Pvu1g2770 677 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 398 432 IPR002885 -
Pvu1g2770 677 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 468 502 IPR002885 -
Pvu1g2770 677 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN, CHLOROPLASTIC 35 669 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g2770 176 642 Glycosyltransferase AT1G05670 21.868 2.67e-33 134
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g2770 - - gmx:100782934 1143.26