Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Pvu1g2761 | ATGATGAAGAAGAAGAAACAGGTACCGGAGTGGATGAATAGTTCTCTGTGGTCCTCCCCCTCCGACCACCACCGCTTTGGCCCGCCCTCTCCACCTCCTTCTCCGCCTCCTCCTCCTCCGCCTCCGCCTCCCCCCGTCTCTGTCAGAGAAGATCCCCCAACTAATCACAATGCCTCTCCTTCTTCTTCGTCCGTCGTCTCTTCTCCTTCTGCATCCTCCGCCGCCGATGACATCTCCTCTCAAGCTCAGTTGTTGACCGAGTTATCTAGGAAGGTTGTAGACATGCGCGAGTTGAGGAGAGTCGCTTCTCAAGGTATTCCTCATGCTGCCGCCCCTGCTTTACGCCCTACGCTCTGGAAGCTTTTGCTTGGATATCTTCCGTCCGATCGTGCCCTTTGGTCCTCTGAATTAGCCAATAAGAGGTCCCAGTACAAACATTTCAAAGACGACCTCCTCATGAATCCTTCAGAAATCACGAGGAGGATCTACAACTCCGCTGCTCATGACATCGATGATGCAAAATCTGAGACTCGTATCTTGCTTTCTAGATCACAAATCACTCATGAAGATCACCCTTTGAGTCTTGGCAAGACCAGCGTATGGAATCAGTTCTTCCAGGACACAGATCTCATAGAGCAGATTGATCGTGATGTAAAACGGACTCATCCAGATATACACTTCTTCTCTGGTGATTCTCAATTGGCAAAATCTAATCAGGATGCTTTGAAGAACATATTACTTATTTTTGCAAAGTTGAATCCAGGTATAAGATATGTTCAAGGGATGAATGAAGTATTGGCTCCTCTCTTCTATGTATTCAAAAATGACCCTGATGAGGAAAATGCTGCCTTTGCTGAAGCAGACACATTCTTTTGTTTTGTTGAGCTATTGAGTGGGTTCCAAGATAATTTTTGTCAACAACTTGATAATAGTATTGTTGGAATCCGTTCCACTATTACAAGATTATCCCAGCTTTTAAAAGAACACGATGAAGAACTGTGGCGTCATCTTGAGGTCACTACCCAGGTCAATCCCCAGTTCTATGCATTTAGGTGGATTACTCTCCTCTTGACTCAGGAATTTAATTTTTCTGACATCCTCCATATTTGGGACATCATTTTAAGTGATCCAGAGGGTCCACAGGAAACACTTCTCAGAATATGCTGCGCAATGCTAATTTTCGTCCGTAGGCGCCTCCTAGCGGGTGATTTCACTTCTAACCTCAAGTTGCTTCAAAGTTATCCCTCTACAAACATTAGTCATTTGCTCCATGTGGCAAACAAGTTACGTGTACAGTCAGGCTAA | 1305 | 0.4536 | MMKKKKQVPEWMNSSLWSSPSDHHRFGPPSPPPSPPPPPPPPPPPVSVREDPPTNHNASPSSSSVVSSPSASSAADDISSQAQLLTELSRKVVDMRELRRVASQGIPHAAAPALRPTLWKLLLGYLPSDRALWSSELANKRSQYKHFKDDLLMNPSEITRRIYNSAAHDIDDAKSETRILLSRSQITHEDHPLSLGKTSVWNQFFQDTDLIEQIDRDVKRTHPDIHFFSGDSQLAKSNQDALKNILLIFAKLNPGIRYVQGMNEVLAPLFYVFKNDPDEENAAFAEADTFFCFVELLSGFQDNFCQQLDNSIVGIRSTITRLSQLLKEHDEELWRHLEVTTQVNPQFYAFRWITLLLTQEFNFSDILHIWDIILSDPEGPQETLLRICCAMLIFVRRRLLAGDFTSNLKLLQSYPSTNISHLLHVANKLRVQSG* | 435 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Pvu1g2761 | 434 | ProSiteProfiles | TBC/rab GAP domain profile. | 109 | 377 | IPR000195 | - | |
| Pvu1g2761 | 434 | Pfam | Rab-GTPase-TBC domain | 113 | 399 | IPR000195 | - | |
| Pvu1g2761 | 434 | SUPERFAMILY | Ypt/Rab-GAP domain of gyp1p | 87 | 336 | IPR035969 | - | |
| Pvu1g2761 | 434 | MobiDBLite | consensus disorder prediction | 1 | 79 | - | - | |
| Pvu1g2761 | 434 | Gene3D | putative rabgap domain of human tbc1 domain family member 14 like domains | 195 | 305 | - | - | |
| Pvu1g2761 | 434 | MobiDBLite | consensus disorder prediction | 52 | 79 | - | - | |
| Pvu1g2761 | 434 | MobiDBLite | consensus disorder prediction | 25 | 50 | - | - | |
| Pvu1g2761 | 434 | Gene3D | - | 313 | 433 | - | - | |
| Pvu1g2761 | 434 | SMART | tbc_4 | 102 | 403 | IPR000195 | - | |
| Pvu1g2761 | 434 | PANTHER | TBC1 DOMAIN FAMILY MEMBER GTPASE-ACTIVATING PROTEIN | 5 | 432 | - | - | |
| Pvu1g2761 | 434 | PANTHER | YPT/RAB-GAP DOMAIN OF GYP1P SUPERFAMILY PROTEIN | 5 | 432 | - | - | |
| Pvu1g2761 | 434 | SUPERFAMILY | Ypt/Rab-GAP domain of gyp1p | 314 | 431 | IPR035969 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Pvu1g2761 | Pvu-Chr1 | 51990109 | 51995766 | Transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Pvu1g2761 | K24796 | - | gmx:100778830 | 692.575 |
Event-related genes