Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g2753 ATGAGCACTGTTGATAAAATGCTGATCAAGGGCATTCGGAGTTTCGACCCGGAGAACAAGAACGTGATCACCTTCTTCAAGCCCTTAACCCTAATCGTTGGTCCCAACGGTGCTGGCAAGACCACCATAATCGAGTGCTTGAAGCTTTCCTGCACCGGCGAGTTGCCTCCGAACGCCAGGTCTGGCCACAGCTTCATCCACGACCCCAAGGTCGCCGGAGAAACTGAAACGAAGGGACAGATTAAGCTCCGATTCAAGACGGCCGCTGGTAAAGACGTGGTCTGCGTCAGGTCCTTTCAGCTTACGCAAAAGGCCTCTAAAATGGAATACAAGGCTATTGAGAGTGTGCTTCAAACCATTAATCCTCACACGGGAGAGAAAGTTTGCCTCAGCTATCGATGCGCTGACATGGATAGAGAGATTCCTGCGCTCATGGGTGTTTCCAAGGCCATTCTCGAAAATGTTATATTCGTTCACCAAGATGAAGCCAACTGGCCCCTACAGGATCCTTCCACCTTGAAGAAGAAGTTTGACGACATCTTTTCCGCAACTCGATACACCAAGGCATTGGAAGTTATAAAGAAACTTCACAAAGAACAGGCTCAAGAGATAAAGACTTACAAGCTCAAACTCGAACATCTTCAAACTCTCAAAGATGCTGCATATAAGCTACGGGAAAGCATTGCACAGGATGAAGAGAAAACAGAGTCTGTAAAATGTCAAGTATTACAGTTGGAAGAGAGCATTAAAAAATTGGAGGATAAAATTCATCATGCAGAGGAAACGATGAAAGATTTGCGGAAGCTGCAAGATCAGATATCGACTAAAACTGCTCAACGAAGCACCCTGCTTAAGGAACAAGAGAAACAGCATGCAGCTCTTGTTGAGGAGAATGTAGATTCTGATGAATTATTGATGGAATGGAAGACCAAGTTTGAAGAAAGGATTGCAATTTTAGAAGCAAAGATAAGAAAGTTGGAAAGAGAATTGAATGACGCTGCGGAGAAAGGTACTGCCCTCACAAATATCATTGGTCATTCCATCAAAGAGATTGCCAAACTACAAGCTGAAGCAGAAGCTCACATGTCTTTGAAGAATGACCGTGATTCCTCCATTCACGATCTTTTTGCTACATATAGTTTAGGATCTCTTCCAAATTCTCCTTTCAGTGACGAGGTTGTTTTAAATCTCACCAGTCGTGTAAAATCGAGGTTGGCAAATCTTGTGAAAGATCTGGAAGATAAAAAGAAAGCAAATGACAATGAACTTGAGATGGGATGGGATTGCTACATGAATGCTAATGACCGTTGGAAAGATACTGAGGCTAAAATAAAGGCTATGCAAGGGATCAAGGATGGCATTCTGAAGCGCATCGAAGAGAAGAAAAATGAGCTTGATTCATCTGAACATCAAATGACTAATGTGAACTTCTCTCACATAGACGAAAGAGAAAGAAATTTGAGAAATGAGATTGAGAGGAAGGAAAGTCAACTATCTCAAAGACAATTTGAACCAAATATACGTCAACTGCAAAATGAGATATATAGTGTAGATCAAAAGATTAGGGCTGTCAATCGAGAGAAGGATATCATGACTTCTGATTCAGAGGACAGAGTTATGCTATCTCACAAGAAAGCAGAGTTGGAAAATCGGAAGAAGAAACATAAAAAAATATTTGATGAACAAAAGGACAAAATTAGAAAGGTGCTAAAAGGGAGGGTTCCCCTTGATAAGGATGTGAAAAAGGAAATTACTCAAGCATTAAGGGCTGTTGGAGCGGAATTTGATGATCTGAATGCAAAGTACCGTGATGCTGAGAAGGAAGTCAATATGTTGCAAATGAAAATACAAGAAGTTAATGGTAACCTATCCAAGCACCACAAGGATTTGGAATCAAGAAAGAGATTTATTGAATCCAAGCTTCAGTCTTTGGATCAGCAATGTTCTGGACTTGATTCTTATCTCAAAGTTTTAGAGTCTTCCAAGGAGAAAAGAGATGTCCAGAGAAGCAAATATAATATCGCTGATGGTATGCGGCAAATGTTTGATCCTTTTGAAAGGGTTGCTAGAGCTCATCATGTCTGCCCTTGCTGTGAACGCCCTTTCTCTCCAGAAGAAGAAGACAATTTTGTCAAGAAGCAAAGAGTGAAGGCTACTAGTTCAGCTGAACATATGAAAGTTCTCGCTGTGGATTCCTCAAATGCAGAGTCTCATTATCAGCAGCTGGACAAGCTTCGGATGGTTTACGAAGAATATGTTAAACTTGGCAAGGAGACCATCCCTAATACTGAAAAGGAACATCAGCAACTTAAAGATGAGATGGATGAGAAAAATCAGGCTCTTGATGATGTTTTAGGTGTTTTAGCACAAGTGAAGACTGACAAGGATTTAGTTGACGCATTAGTGCAACCAGCTGAAAATGCTGACAGGCTTTTCCAAGAAATTCAAGATTTGCAAAAGCAAGTTGAGGATTTAGAAGATAAGCTTGATTTTCGAGGACAGGGAGTGAAGACTCTGGAAGAGATTCAACTGGAGCTTAACACACTGCAGAGCACTAAGGACAATTTTCAATCTGAGTCGGAGAGGTTGAGGGAAGAACAAAGACATATGGAGAACGATCTATCAAATATTCGTATACGGTGGCACAATCTAACGAAGGAGAAAATGAAAGCAACCAACATATTGCAAGGTGTTAAGAGATTAGAAGAAGAGTTGGAACGTTTATCTGAAGAAAAGACTCAAGTTGATCTTGATGAGAAGCATTTGGCAGATGCTCTCGGACCTTTTTCCAAGGAGAAAGATAAATTACTGGCTAATTATAATGAAATGAAAATTAGACTCAACCGTGAGTACGAGGACCTGGCTGAGCAAAAAAGAAGTTATCAGCAAGAAGCTGAATCACTTTTCAGAATGAATTCTAAGATCAAAGAGTATTCTGATTTAAAGAAAGGAGATAGGTTGAAGGAACTACAGGAAAAAAATTCTCTATCACAATCACAACTTCAAAGTTGTGAGAGCAGGAAGCAGGAAATTTTAGCTGAGCTAGTCAAAAGTAAAGATTTGATGCAAAATCAAGATCAGTTAAGAAGAAAAATTGATGACAACTTAAATTATAGGAAAACTAAGGCTGAAGTAGATGAGCTAGCACATGAAATTGAATCGCTGGAAGAAAATATATTGAAGGCTGGTGGACTCTCCACAATTGAAACTGAACGCCAGAAACTATCACATGAGAGGGAGAGATTTCTTTCAGAGGTAAACAGGTGCCGTGGAACAATGTCTGTTTACCAAAGCAATATTTCCAAAAATAAGGTTGATCTTAAGCAGGCTCAATACAAGGACATAGATAAGCGATACTACGACCAGCTTCTCCAACTTAAGACAACTGAAATGGCCAACAAGGATCTGGACAGATACTACAATGCACTTGATAAGGCACTGATGCGCTTCCACACAATGAAAATGGAAGAGATCAACAAAATTATTAGAGAGTTGTGGCAGCAAACCTATAGAGGGCAAGACATAGACTATATTAGTATTCATTCAGACTCCGAAGGTGCAGGGACCCGTTCCTACAGTTATAAGGTTATTATGCAGACTGGTGACGCAGAGTTGGAGATGAGAGGAAGATGTAGCGCTGGTCAGAAGGTTCTGGCATCTCTTATCATAAGGTTGGCACTAGCTGAAACGTTTTGTCTCAATTGTGGAATACTTGCGCTGGATGAACCTACCACAAATTTGGATGGACCAAATGCTGAAAGTCTGGCTGCAGCTCTTGTAAGGATCATGGAGGACAGGAAAGGTCAGGAAAATTTCCAGCTAATTGTAATCACTCACGATGAGCGTTTTGCTCAAATGATTGGTCAGCGCCAGCATGCAGAGAGATATTATCGTGTGGCCAAAGATGATCTTCAGCACAGTATAATCGAAAGTCAGGAGATATTTGACTGA 3951 0.407 MSTVDKMLIKGIRSFDPENKNVITFFKPLTLIVGPNGAGKTTIIECLKLSCTGELPPNARSGHSFIHDPKVAGETETKGQIKLRFKTAAGKDVVCVRSFQLTQKASKMEYKAIESVLQTINPHTGEKVCLSYRCADMDREIPALMGVSKAILENVIFVHQDEANWPLQDPSTLKKKFDDIFSATRYTKALEVIKKLHKEQAQEIKTYKLKLEHLQTLKDAAYKLRESIAQDEEKTESVKCQVLQLEESIKKLEDKIHHAEETMKDLRKLQDQISTKTAQRSTLLKEQEKQHAALVEENVDSDELLMEWKTKFEERIAILEAKIRKLERELNDAAEKGTALTNIIGHSIKEIAKLQAEAEAHMSLKNDRDSSIHDLFATYSLGSLPNSPFSDEVVLNLTSRVKSRLANLVKDLEDKKKANDNELEMGWDCYMNANDRWKDTEAKIKAMQGIKDGILKRIEEKKNELDSSEHQMTNVNFSHIDERERNLRNEIERKESQLSQRQFEPNIRQLQNEIYSVDQKIRAVNREKDIMTSDSEDRVMLSHKKAELENRKKKHKKIFDEQKDKIRKVLKGRVPLDKDVKKEITQALRAVGAEFDDLNAKYRDAEKEVNMLQMKIQEVNGNLSKHHKDLESRKRFIESKLQSLDQQCSGLDSYLKVLESSKEKRDVQRSKYNIADGMRQMFDPFERVARAHHVCPCCERPFSPEEEDNFVKKQRVKATSSAEHMKVLAVDSSNAESHYQQLDKLRMVYEEYVKLGKETIPNTEKEHQQLKDEMDEKNQALDDVLGVLAQVKTDKDLVDALVQPAENADRLFQEIQDLQKQVEDLEDKLDFRGQGVKTLEEIQLELNTLQSTKDNFQSESERLREEQRHMENDLSNIRIRWHNLTKEKMKATNILQGVKRLEEELERLSEEKTQVDLDEKHLADALGPFSKEKDKLLANYNEMKIRLNREYEDLAEQKRSYQQEAESLFRMNSKIKEYSDLKKGDRLKELQEKNSLSQSQLQSCESRKQEILAELVKSKDLMQNQDQLRRKIDDNLNYRKTKAEVDELAHEIESLEENILKAGGLSTIETERQKLSHERERFLSEVNRCRGTMSVYQSNISKNKVDLKQAQYKDIDKRYYDQLLQLKTTEMANKDLDRYYNALDKALMRFHTMKMEEINKIIRELWQQTYRGQDIDYISIHSDSEGAGTRSYSYKVIMQTGDAELEMRGRCSAGQKVLASLIIRLALAETFCLNCGILALDEPTTNLDGPNAESLAAALVRIMEDRKGQENFQLIVITHDERFAQMIGQRQHAERYYRVAKDDLQHSIIESQEIFD* 1317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g2753 1316 Coils Coil 309 343 - -
Pvu1g2753 1316 Pfam Rad50 zinc hook motif 688 724 IPR013134 -
Pvu1g2753 1316 Coils Coil 987 1007 - -
Pvu1g2753 1316 Coils Coil 402 422 - -
Pvu1g2753 1316 Coils Coil 937 971 - -
Pvu1g2753 1316 Coils Coil 545 565 - -
Pvu1g2753 1316 Pfam AAA domain 7 256 IPR038729 GO:0140664
Pvu1g2753 1316 Gene3D - 4 289 IPR027417 -
Pvu1g2753 1316 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 21 1286 IPR027417 -
Pvu1g2753 1316 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 6 283 IPR027417 -
Pvu1g2753 1316 Coils Coil 839 880 - -
Pvu1g2753 1316 Coils Coil 235 286 - -
Pvu1g2753 1316 PANTHER RAD50 1 1314 - -
Pvu1g2753 1316 Coils Coil 451 471 - -
Pvu1g2753 1316 Coils Coil 1038 1065 - -
Pvu1g2753 1316 Coils Coil 808 828 - -
Pvu1g2753 1316 Gene3D - 1065 1315 IPR027417 -
Pvu1g2753 1316 Coils Coil 760 780 - -
Pvu1g2753 1316 Coils Coil 477 497 - -
Pvu1g2753 1316 Coils Coil 891 918 - -
Pvu1g2753 1316 CDD ABC_Rad50 4 170 IPR045171 -
Pvu1g2753 1316 Coils Coil 588 622 - -
Pvu1g2753 1316 ProSiteProfiles Rad50 zinc-hook domain profile. 648 747 IPR013134 -
Pvu1g2753 1316 Coils Coil 627 647 - -
Pvu1g2753 1316 Coils Coil 197 217 - -
Pvu1g2753 1316 CDD ABC_Rad50 1205 1308 IPR045171 -
Pvu1g2753 1316 TIGRFAM rad50: rad50 3 1309 IPR004584 GO:0000723|GO:0005634|GO:0006281|GO:0016887|GO:0030870
Pvu1g2753 1316 Coils Coil 507 527 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g2753 K10866 - gmx:100818545 2205.25
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g2753 1 51930350 51940813 Pvu1g2753 1 51930350 51940813 ECH