Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g2752 TTTGTAGCAGCAGCAGCAATATCCACAGCCACCGCCACTGCCACCGCCACCGCCACCACCACCACCACCGTCTCTCACCGTTTTCTGTGTCTGGAAATCGCACCTCCTCCATCCTCTCCCAAACCTAAACATCCACAACACTTGCTCTCTCTTCTTCTCAAACATCCTTCTCAACCCCAAGTTCTGCAACAAGTTCACTGTCACATTATCACCTCTGGCCTCTTTCACTACCCTTTTCACAACACCTCCACTTGTTTACTCCTCTTGAACAACGTCATCCGCTGTTACTCCCGTGGCCCTTCCCCCCACCTAGCTCTTCACTTCTTTAGGTACACCCAACATTCCCACACTTTGTTCGCGTACCCTTCCCTTGACAGCTTCTCTTTTGCCTTTCTTTTCCACGCTTCTGCCAATCCAACCTGCACCCACTTTGGGACTCAACTCCACGCCCTCGTTTTCAAGGTCGGGTTTCAGTTTCATGTGTATGTGCAAACTGGGTTGTTGCAAATGTACTCAAGTTGGGGTCTTTTAGTTGAAGCCGCCCAAGTGTTCTACCAAATGCCGCATAGAAGCTTGGTTACTTGGAATGTTTTCATCACTGGTTTGATTAAATGGGGTGAGGTTGAACTTGCTCTTTCTGTGTTTAGTCAGATGTCTTCTCGGAGTGTAGTGTCATGGACCCTTGTTATTGATGGATACACACGCAAGAATCAGCCCATGAAAGCTTTAGCTTTGTTTAGGGAAATGATCGAAGTTGATGGTATAGAACCTACTCACGTTACTCTTTTGACCATTTTTCCTGCTATTGCAAATATTGGGTGTATTAAGTTATGTCAATCTGCTCATGGATATGCGGAGAAGAGAGGGTTCAATGCCTTTGATATACGCATTACCAATGCATTAATTGATTTATATGCAAAGTGTGGATGCACAGCAAGTGTGAATAGATTCTTGCAGGAGTTACCTGATCAGAGGAAGAATCTGGTATCATGGACTTCAGCTATCTCTGGTTTTGCAATGAATGGGATGGGGAGGGAAGCTCTAGAGACTTTTGAAAACATGGAGAAGGCTGGGCTTAGGCCGAACCGTGTGACATTCCTTAGTGTTTTGAGTGGCTGTAGTCATGGAGGATTGGTTCAAGAAGGCCTCAATTTCTTTGTTAAAATGGTAGAGGATTGTAAACTTGTGCCAGATATCAAGCACTATGGTTGTGTGATAGATATGCTGGGGAGGGCTGGGAGGTTAGAAGAAGCAGAAAAGGTTGCTTCACAGGTACCTCATGAGGTTGCCAATGCTGTGATGTGGAGAACGTTGCTGGGTGCTTGTAGTGTTCATAATAATGTTGAAATTGGTCAGAGGGTAACCAGGAAAATACTAGAGATGGAGAGAGGACACGGTGGGGATTATGTTCTTATGTCCAATATTCTTGTTGGTGTTGGGAGATTTAAGGACGCTCAAAGGTTGAGAGATATGATAGATAAAAGAATTGCCTTTAAACTTCCTGGCTATAGTATAATCTAA 1521 0.4477 FVAAAAISTATATATATATTTTTVSHRFLCLEIAPPPSSPKPKHPQHLLSLLLKHPSQPQVLQQVHCHIITSGLFHYPFHNTSTCLLLLNNVIRCYSRGPSPHLALHFFRYTQHSHTLFAYPSLDSFSFAFLFHASANPTCTHFGTQLHALVFKVGFQFHVYVQTGLLQMYSSWGLLVEAAQVFYQMPHRSLVTWNVFITGLIKWGEVELALSVFSQMSSRSVVSWTLVIDGYTRKNQPMKALALFREMIEVDGIEPTHVTLLTIFPAIANIGCIKLCQSAHGYAEKRGFNAFDIRITNALIDLYAKCGCTASVNRFLQELPDQRKNLVSWTSAISGFAMNGMGREALETFENMEKAGLRPNRVTFLSVLSGCSHGGLVQEGLNFFVKMVEDCKLVPDIKHYGCVIDMLGRAGRLEEAEKVASQVPHEVANAVMWRTLLGACSVHNNVEIGQRVTRKILEMERGHGGDYVLMSNILVGVGRFKDAQRLRDMIDKRIAFKLPGYSII* 507
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g2752 506 PANTHER - 204 506 - -
Pvu1g2752 506 PANTHER - 60 219 - -
Pvu1g2752 506 Pfam E motif 445 506 IPR046848 -
Pvu1g2752 506 Pfam PPR repeat family 326 374 IPR002885 -
Pvu1g2752 506 Pfam PPR repeat family 222 267 IPR002885 -
Pvu1g2752 506 Gene3D Tetratricopeptide repeat domain 375 498 IPR011990 GO:0005515
Pvu1g2752 506 TIGRFAM PPR: pentatricopeptide repeat domain 364 398 IPR002885 -
Pvu1g2752 506 TIGRFAM PPR: pentatricopeptide repeat domain 193 224 IPR002885 -
Pvu1g2752 506 TIGRFAM PPR: pentatricopeptide repeat domain 224 258 IPR002885 -
Pvu1g2752 506 TIGRFAM PPR: pentatricopeptide repeat domain 329 362 IPR002885 -
Pvu1g2752 506 Pfam PPR repeat 402 421 IPR002885 -
Pvu1g2752 506 Pfam PPR repeat 167 190 IPR002885 -
Pvu1g2752 506 Gene3D Tetratricopeptide repeat domain 87 224 IPR011990 GO:0005515
Pvu1g2752 506 Gene3D Tetratricopeptide repeat domain 228 374 IPR011990 GO:0005515
Pvu1g2752 506 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 191 225 IPR002885 -
Pvu1g2752 506 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 327 361 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g2752 Pvu-Chr1 51927284 51928804 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g2752 127 506 Glycoside Hydrolase AT3G49170 30.789 7.39e-59 207
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g2752 - - vra:106778259 893.264