Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g2747 ATGAAGAACCTATTTTTTGTCCTTCTAATATTTGTTAGAGTTATTGCTTCATCTACCTTCTGTCCTTCAAGTCTCACCTTCAACGTTCTTAGCTACGGTGCCACGGGGAATGGTCACACCGATGATACACAGGCTTTCCTAAAAGCATGGAAGGACGTGTGTGGTGCAACTCGGAATTACGTAAAACTTCTCATACCCGACAATAAAATGTTCCTGTTGCAACCTCTGTCGTTTAAGGGCCCTTGCAATCCAGCAACCATTGAAGTTCTGCTGGAGGGGACTGTCACTGCCCCAGAAAGAGTTGGGGTTTGGAAATTTTTGGATAACAGAAGGAAATGGATACAATTCTCGGACATATCTGGTCTTGTAATGAAGGGAGGAGGGCAGATAGATGGACAAGGTGCTGCGTGGTGGAACTCCAATGATGTCTCCAACAGGCCCACTGCTCTTCATTTCCATAACTGTAAAGACGTAAGACTTAGTTCGATCCATCACAAGAACAGCCCCAGAAATCATATAAGCATAGATACGTGCAATAGCCTAGAGATATCCCACATTCACATTACTGCACCAGAGGAAAGTCCAAACACCGACGGCATAGATATCTCTGGATCATCCAACATCTTTATACACAGTTCCCACATTCAAACTGGTGATGACTGCATTGCCATAAACTCGGGTACTTCTTCGGTTAATATAAGCGATATTTTTTGTGGACCTGGCCACGGCATCAGCATTGGGAGCCTGGGACGCAACGGAGAGGATGCGAGAGTTGAAGAGATATACGTGAGGAACTGCACCTTCGTGGGAACATCGAACGGAGTGAGAGTGAAGACATGGAGGGGTGGACGAGGTTATGCGAGGAAGATAAGATTTGAAGATATTAAAGTTGTCGGAGTGAAGCAGCCGGTGATTATCGACCAGGAATATTCCTCGGTGGAGATGGAAAGTGAGAGAAGTGCAGTGAAAATAAGCGAGGTGAGTTACCGGAACGTGAAGGGAACAAGTAGCAGTGACAGTGCAGTGGAGCTGAGTTGTGATCCGAACGTAGGTTGCAGTGAGATTTTAATGGAGGATATTTCCATAACCAAAGAAGATGGGAGTGTAGCAACTGCATCATGCACAAATGCACACGGCACCTCCTCTCACTGCAATCCAATCGTCCCTTGTCTTAACTAG 1179 0.458 MKNLFFVLLIFVRVIASSTFCPSSLTFNVLSYGATGNGHTDDTQAFLKAWKDVCGATRNYVKLLIPDNKMFLLQPLSFKGPCNPATIEVLLEGTVTAPERVGVWKFLDNRRKWIQFSDISGLVMKGGGQIDGQGAAWWNSNDVSNRPTALHFHNCKDVRLSSIHHKNSPRNHISIDTCNSLEISHIHITAPEESPNTDGIDISGSSNIFIHSSHIQTGDDCIAINSGTSSVNISDIFCGPGHGISIGSLGRNGEDARVEEIYVRNCTFVGTSNGVRVKTWRGGRGYARKIRFEDIKVVGVKQPVIIDQEYSSVEMESERSAVKISEVSYRNVKGTSSSDSAVELSCDPNVGCSEILMEDISITKEDGSVATASCTNAHGTSSHCNPIVPCLN* 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g2747 392 PANTHER - 23 391 - -
Pvu1g2747 392 Pfam Glycosyl hydrolases family 28 58 380 IPR000743 GO:0004650|GO:0005975
Pvu1g2747 392 SUPERFAMILY Pectin lyase-like 10 391 IPR011050 -
Pvu1g2747 392 Gene3D - 16 387 IPR012334 -
Pvu1g2747 392 PANTHER - 23 391 - -
Pvu1g2747 392 ProSitePatterns Polygalacturonase active site. 235 248 IPR000743 GO:0004650|GO:0005975
Pvu1g2747 392 SMART pbh1 178 204 IPR006626 -
Pvu1g2747 392 SMART pbh1 205 226 IPR006626 -
Pvu1g2747 392 SMART pbh1 258 279 IPR006626 -
Pvu1g2747 392 SMART pbh1 228 248 IPR006626 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g2747 Pvu-Chr1 51908076 51910486 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g2747 4 380 Glycoside Hydrolase AT5G17200 45.278 3.27e-120 353
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g2747 K01184 - jre:108997191 412.92