Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g2743 ATGTCCGTCGCTCAGTTTCTCCATTCTCAACTGTGCTCCGTGCCAAGGCAGAGCCCGTGCCTGGTCAAGAAGATTCATGCGCAAATCATAAAAGCTGGTCTCAACCATTATGAACCCATCCCCAACACACTTTTACATGCATATGGCAAATGTGGTCTGGTAGAAGACGCAATCCAACTGTTCGACGCATTGCCCCGCCGAAACCCAGTCGCATGGGCCTCCCTCCTCACCGCCTGCAACCTCGCCAACCGCCCTCACCGTGCCCTCTCCATCTCACGCTCCCTTCTCGCCGCCGGCTTCGACCCCGACCACTTCGTCTTCGCCTCCCTCGTCAAAGCTTGTTCTAACTTGGGTGCTCTTCACGTGAAACAAGGGAAACAAGTGCATGTTCGCTTCTTCCTCTCACCATTCTCCGATGATGACGTTGTCAAGTCATCTTTGGTCGACATGTACGCGAAATTCGGGTTGCCCGATTACGGGCGTGCCGTTTTCGACTCCATTTCTTCGTTGAATTCGATTTCCTGGACTGCCATGATATCTGGGTATGCGCGAAGTGGGCGAAAGTTGGAGGCTTTTCAACTGTTTCGTCAAACGCCGTATCGGAACTTGTTTGCTTGGACTGCTTTGATTTCCGGGTTGGTCCAGAGTGGGAATGGGTTTGAGGCGTTGCACATGTTTGTTGAAATGCGGCATGATGGGGTTAGTGTAACAGACCCGTTGGTTCTGTCCAGTGTGGTTGGTGCTTGTTCTAATTTAGCTCTCTGGGAGCTGGGTAAACAGATGCACTGTCTGGTTATAGCCCTTGGCTATGAGTCTTGCTTGTTTATAAGCAATGCATTTGTAGATATGTATGCCAAATGCAGTGACCTTGTTGCTGCAAAGTATATCTTCTGGGACATGTGCAGAAAGGATGTGGTTTCTTGGACTTCTATAATTGTTGGCAGTGCCCAACATGGACAGGCTGAGGAGGCTCTGGGTCTGTATGATGGCATGGTTTTGGCTGGGGTTAAGCCAAATGAGGTGACCTTTGTTGGGTTGATTCATGCATGTAGCCATGCTGGCCTAGTTAGCAAGGGCAGGGCTTTGTTCAAGTCTATGGTTGAAGATTATGGAATTAAGCCCTCTCTTCAGCACTATACTTGTTTGCTAGATCTTTTTAGTCGATCAGGGCATCTTCATGAGGCTGAGAGTCTCATTAGAACTATGCCAGTCAGCCCTGATGAACCCACTTGGGCTGCTTTGCTTAGTGCTTGCAAGCAGCATGGTAACACCCAGATGGCAGTTAGGATTGCTGATCATCTGTTAAATTTAAAACCAGAAGAATCTTCTTCTTATATATTGTTATCTAACGTATATGCCGGAGCTGGTATGTGGGAGAATGTTTCTAAAGTGAGAAAGTTAATGATGGTCATGGAAGTAAAAAAGGAACCAGGTTATAGCTGCATCGACTTGGGAAAGGAAAGCCATGTGTTTTATGCTGGAGAGACTTCTCACCCAATGAAGAATGAGATTATAGGTTTAGTTAGGGAGTTAGATGCAGAGATGAGGAAAAGGGGTTACGCTCCTGATACTAGCTCGGTTTTACATGATATGGATCAACAAGAGAAGGAAAGACAACTTTTCTGGCACAGTGAGAGGTTGGCTGTGGCTTATGGGCTTCTAAAGGCTGTTCCAGGGACTATAATACGTATAGTGAAAAATCTTCGTGTTTGTGGAGACTGTCATACTGTTCTCAAACTGATCAGCACTATAACAAATAGGGAAATTTATGTCCGAGATGCCAAAAGATATCACCATTTTAAGGATGGGAGTTGTTCTTGCCATGACTTCTGGTGA 1836 0.4673 MSVAQFLHSQLCSVPRQSPCLVKKIHAQIIKAGLNHYEPIPNTLLHAYGKCGLVEDAIQLFDALPRRNPVAWASLLTACNLANRPHRALSISRSLLAAGFDPDHFVFASLVKACSNLGALHVKQGKQVHVRFFLSPFSDDDVVKSSLVDMYAKFGLPDYGRAVFDSISSLNSISWTAMISGYARSGRKLEAFQLFRQTPYRNLFAWTALISGLVQSGNGFEALHMFVEMRHDGVSVTDPLVLSSVVGACSNLALWELGKQMHCLVIALGYESCLFISNAFVDMYAKCSDLVAAKYIFWDMCRKDVVSWTSIIVGSAQHGQAEEALGLYDGMVLAGVKPNEVTFVGLIHACSHAGLVSKGRALFKSMVEDYGIKPSLQHYTCLLDLFSRSGHLHEAESLIRTMPVSPDEPTWAALLSACKQHGNTQMAVRIADHLLNLKPEESSSYILLSNVYAGAGMWENVSKVRKLMMVMEVKKEPGYSCIDLGKESHVFYAGETSHPMKNEIIGLVRELDAEMRKRGYAPDTSSVLHDMDQQEKERQLFWHSERLAVAYGLLKAVPGTIIRIVKNLRVCGDCHTVLKLISTITNREIYVRDAKRYHHFKDGSCSCHDFW* 612
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g2743 611 Pfam PPR repeat family 303 351 IPR002885 -
Pvu1g2743 611 Gene3D Tetratricopeptide repeat domain 281 498 IPR011990 GO:0005515
Pvu1g2743 611 Gene3D Tetratricopeptide repeat domain 6 130 IPR011990 GO:0005515
Pvu1g2743 611 Pfam PPR repeat 42 67 IPR002885 -
Pvu1g2743 611 Pfam PPR repeat 379 402 IPR002885 -
Pvu1g2743 611 Pfam PPR repeat 205 234 IPR002885 -
Pvu1g2743 611 Pfam PPR repeat 173 197 IPR002885 -
Pvu1g2743 611 Pfam E motif 421 482 IPR046848 -
Pvu1g2743 611 TIGRFAM PPR: pentatricopeptide repeat domain 341 375 IPR002885 -
Pvu1g2743 611 TIGRFAM PPR: pentatricopeptide repeat domain 42 64 IPR002885 -
Pvu1g2743 611 TIGRFAM PPR: pentatricopeptide repeat domain 205 237 IPR002885 -
Pvu1g2743 611 TIGRFAM PPR: pentatricopeptide repeat domain 306 340 IPR002885 -
Pvu1g2743 611 TIGRFAM PPR: pentatricopeptide repeat domain 173 197 IPR002885 -
Pvu1g2743 611 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 202 236 IPR002885 -
Pvu1g2743 611 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 6 599 - -
Pvu1g2743 611 Pfam DYW family of nucleic acid deaminases 519 611 IPR032867 GO:0008270
Pvu1g2743 611 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 171 201 IPR002885 -
Pvu1g2743 611 PANTHER OS11G0661000 PROTEIN 6 599 - -
Pvu1g2743 611 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 304 338 IPR002885 -
Pvu1g2743 611 Gene3D Tetratricopeptide repeat domain 134 256 IPR011990 GO:0005515
Pvu1g2743 611 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 339 374 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g2743 Pvu-Chr1 51890695 51892530 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g2743 21 611 Glycoside Hydrolase AT3G49170 37.148 5.38e-130 400
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g2743 - - gmx:100782048 1112.44