Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g2616 ATGGCCAGTGCAGGAGGCTACGGAGACGCGAACCAGAAGGTAGATTACGTGTTCAAGGTGGTGCTTATAGGCGATTCCGCGGTGGGGAAGTCGCAGATACTTGCGCGATTCGCCAGAAACGAGTTCAGCTTGGATTCGAAGGCCACAATCGGCGTCGAGTTCCAAACGCGCACTTTGGTGATTCAGCACAAGAGCGTCAAGGCTCAGATCTGGGACACTGCTGGACAAGAACGATATAGAGCAGTCACAAGTGCATACTACAGGGGTGCTGTCGGGGCAATGTTGGTTTACGACATCACAAAACGTCAAAGCTTCAATCACATACCTCGCTGGTTAGAAGAACTGCGTAACCATGCTGATAAGAATATAGTCATTATTCTTATAGGAAACAAAAGTGATCTGGAGAACCAGCGTCAGGTACCCACAGAGGATGCAAAAGAATTTGCCGAGAAAGAAGGTTTATTTTTCTTGGAGACTTCAGCACTGGAAGCGACTAACGTTGAAACAGCCTTCATGACGGTTTTGACGGAAATATTCAACATTGTTAACAAGAAGAACCTAGCGGCTGGTGATAGTCAGGGAAATGGCAACTCAGCATCTCTGTCTGGCAAGAAGATTATTGTTCCCGGTCCTGCTCAAGAAATCCCTAAGGGGAACATGTGTTGTCAGTAA 672 0.4732 MASAGGYGDANQKVDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITKRQSFNHIPRWLEELRNHADKNIVIILIGNKSDLENQRQVPTEDAKEFAEKEGLFFLETSALEATNVETAFMTVLTEIFNIVNKKNLAAGDSQGNGNSASLSGKKIIVPGPAQEIPKGNMCCQ* 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g2616 223 PRINTS Transforming protein P21 ras signature 18 39 - -
Pvu1g2616 223 PRINTS Transforming protein P21 ras signature 41 57 - -
Pvu1g2616 223 PRINTS Transforming protein P21 ras signature 59 81 - -
Pvu1g2616 223 PRINTS Transforming protein P21 ras signature 121 134 - -
Pvu1g2616 223 PRINTS Transforming protein P21 ras signature 156 178 - -
Pvu1g2616 223 ProSiteProfiles small GTPase Rab1 family profile. 13 222 - -
Pvu1g2616 223 SMART rho_sub_3 20 177 IPR001806 GO:0003924|GO:0005525
Pvu1g2616 223 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 13 186 IPR027417 -
Pvu1g2616 223 PANTHER - 1 222 - -
Pvu1g2616 223 SMART ran_sub_2 23 220 - -
Pvu1g2616 223 ProSiteProfiles small GTPase Rho family profile. 11 182 - -
Pvu1g2616 223 ProSiteProfiles small GTPase Ras family profile. 11 208 IPR001806 GO:0003924|GO:0005525
Pvu1g2616 223 Gene3D - 10 208 IPR027417 -
Pvu1g2616 223 PANTHER RAB GTPASE-LIKE PROTEIN A1D 1 222 - -
Pvu1g2616 223 SMART rab_sub_5 18 181 - -
Pvu1g2616 223 TIGRFAM small_GTP: small GTP-binding protein domain 17 174 IPR005225 GO:0005525
Pvu1g2616 223 SMART arf_sub_2 1 185 - -
Pvu1g2616 223 Pfam Ras family 19 178 IPR001806 GO:0003924|GO:0005525
Pvu1g2616 223 SMART ras_sub_4 15 181 - -
Pvu1g2616 223 CDD Rab11_like 15 179 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g2616 Pvu-Chr1 51067085 51070953 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g2616 K07904 - gmx:100527786 425.246
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu2g2689 2 42765464 42768466 Pvu1g2616 1 51067085 51070953 PCT