Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g2607 ATGGGTGCTTCGGGCTCCAAACTCGAGAAAGCTCTCGGCGACCAATTCCCCGAAGGAGAACGTTACTTCGGCCTTGAGAATTTCGGCAATACTTGTTACTGCAACAGCGTTTTGCAGGCACTATACTTCTGTGTTCCTTTTCGAGAACAATTGCTAGAGTTTTATGCAAATAACAAGAACTTGGCAGATGGTGAGGAAAATCTTTTGTCTTGCTTAGCTGACTTATTTTCACAGATAAGTTCTCAGAAGAAGAAAACTGGTGTTATTGCTCCCAAACGATTTGTTCAGAGGTTGAAAAAACAGAATGAGCTCTTCCGTAGCTATATGCACCAGGATGCTCACGAATTCTTGAACTTTTTGCTAAATGAACTTGTTGACATTCTGGAGAAAGAGGCCAAAAGAAAGGAAGAAGAAACATCACCACCATCTGAAAAGGCTGCAAATGGACCTAATAATGGTCTACCTAATGGTGCTGAAAAAAAGCCTTTAAAAACTTGGGTGCACAAAAATTTTCAGGGAATACTCACCAACGAAACTAGGTGCCTGCGTTGTGAAACTGTGACAGCCAGGGATGAAACATTTTTTGACTTGAGCCTTGATATTGAACAAAATAGTTCAATTACAAGTTGTTTGAAAAACTTCAGTTCAATGGAGACATTGAATGCTGAAGACAAATTTTGTTGTGACAAGTGCTGCAGTTTGCAGGAAGCTCAGAAGAGAATGAAGATAAAGAAACCACCACACATCTTGGTCATACACCTTAAGCGGTTTAAATACATTGAACAGCTGGGACGCTACAAGAAGCTGTCTTACCGGGTTGTCTTCCCTCTTGAGCTGAAATTAAGCGATACTGTTGAAGATTCAGATATTGAGTATTCTCTATTTGCAGTAGTTGTTCATGTTGGGAGTGGGCCCAACCATGGGCATTATGTAAGCCTTGTGAAAAGCCACAACCATTGGTTATTTTTTGATGACGAAAATGTTGAGATGATTGATGAGTCTGCTGTTCAGACATTTTTTGGGTCATCGCAAGAGTATTCCAGCAATACAGACCATGGTTACATTTTGTTCTATGAGAGCATTGGCTCTGGTAACAAGAACTAG 1104 0.4049 MGASGSKLEKALGDQFPEGERYFGLENFGNTCYCNSVLQALYFCVPFREQLLEFYANNKNLADGEENLLSCLADLFSQISSQKKKTGVIAPKRFVQRLKKQNELFRSYMHQDAHEFLNFLLNELVDILEKEAKRKEEETSPPSEKAANGPNNGLPNGAEKKPLKTWVHKNFQGILTNETRCLRCETVTARDETFFDLSLDIEQNSSITSCLKNFSSMETLNAEDKFCCDKCCSLQEAQKRMKIKKPPHILVIHLKRFKYIEQLGRYKKLSYRVVFPLELKLSDTVEDSDIEYSLFAVVVHVGSGPNHGHYVSLVKSHNHWLFFDDENVEMIDESAVQTFFGSSQEYSSNTDHGYILFYESIGSGNKN* 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g2607 367 MobiDBLite consensus disorder prediction 132 160 - -
Pvu1g2607 367 Coils Coil 118 138 - -
Pvu1g2607 367 Pfam Ubiquitin carboxyl-terminal hydrolase 23 358 IPR001394 GO:0004843|GO:0016579
Pvu1g2607 367 SUPERFAMILY Cysteine proteinases 21 360 IPR038765 -
Pvu1g2607 367 Gene3D Cysteine proteinases 5 360 - -
Pvu1g2607 367 ProSitePatterns Ubiquitin specific protease (USP) domain signature 2. 292 310 IPR018200 GO:0004843|GO:0006511
Pvu1g2607 367 PANTHER UBIQUITINYL HYDROLASE 1-RELATED 1 365 - -
Pvu1g2607 367 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 1 365 - -
Pvu1g2607 367 CDD Peptidase_C19G 24 359 - -
Pvu1g2607 367 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 24 39 IPR018200 GO:0004843|GO:0006511
Pvu1g2607 367 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 23 361 IPR028889 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g2607 Pvu-Chr1 50992537 50996993 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g2607 24 332 Miscellaneous Gene Families AT4G31670 27.129 7.07e-30 119
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g2607 K11842 - gmx:100787737 706.057